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Machine learning approach to dynamic risk modeling of mortality in COVID-19: a UK Biobank study

The COVID-19 pandemic has created an urgent need for robust, scalable monitoring tools supporting stratification of high-risk patients. This research aims to develop and validate prediction models, using the UK Biobank, to estimate COVID-19 mortality risk in confirmed cases. From the 11,245 particip...

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Autores principales: Dabbah, Mohammad A., Reed, Angus B., Booth, Adam T. C., Yassaee, Arrash, Despotovic, Aleksa, Klasmer, Benjamin, Binning, Emily, Aral, Mert, Plans, David, Morelli, Davide, Labrique, Alain B., Mohan, Diwakar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8376891/
https://www.ncbi.nlm.nih.gov/pubmed/34413324
http://dx.doi.org/10.1038/s41598-021-95136-x
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author Dabbah, Mohammad A.
Reed, Angus B.
Booth, Adam T. C.
Yassaee, Arrash
Despotovic, Aleksa
Klasmer, Benjamin
Binning, Emily
Aral, Mert
Plans, David
Morelli, Davide
Labrique, Alain B.
Mohan, Diwakar
author_facet Dabbah, Mohammad A.
Reed, Angus B.
Booth, Adam T. C.
Yassaee, Arrash
Despotovic, Aleksa
Klasmer, Benjamin
Binning, Emily
Aral, Mert
Plans, David
Morelli, Davide
Labrique, Alain B.
Mohan, Diwakar
author_sort Dabbah, Mohammad A.
collection PubMed
description The COVID-19 pandemic has created an urgent need for robust, scalable monitoring tools supporting stratification of high-risk patients. This research aims to develop and validate prediction models, using the UK Biobank, to estimate COVID-19 mortality risk in confirmed cases. From the 11,245 participants testing positive for COVID-19, we develop a data-driven random forest classification model with excellent performance (AUC: 0.91), using baseline characteristics, pre-existing conditions, symptoms, and vital signs, such that the score could dynamically assess mortality risk with disease deterioration. We also identify several significant novel predictors of COVID-19 mortality with equivalent or greater predictive value than established high-risk comorbidities, such as detailed anthropometrics and prior acute kidney failure, urinary tract infection, and pneumonias. The model design and feature selection enables utility in outpatient settings. Possible applications include supporting individual-level risk profiling and monitoring disease progression across patients with COVID-19 at-scale, especially in hospital-at-home settings.
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spelling pubmed-83768912021-08-20 Machine learning approach to dynamic risk modeling of mortality in COVID-19: a UK Biobank study Dabbah, Mohammad A. Reed, Angus B. Booth, Adam T. C. Yassaee, Arrash Despotovic, Aleksa Klasmer, Benjamin Binning, Emily Aral, Mert Plans, David Morelli, Davide Labrique, Alain B. Mohan, Diwakar Sci Rep Article The COVID-19 pandemic has created an urgent need for robust, scalable monitoring tools supporting stratification of high-risk patients. This research aims to develop and validate prediction models, using the UK Biobank, to estimate COVID-19 mortality risk in confirmed cases. From the 11,245 participants testing positive for COVID-19, we develop a data-driven random forest classification model with excellent performance (AUC: 0.91), using baseline characteristics, pre-existing conditions, symptoms, and vital signs, such that the score could dynamically assess mortality risk with disease deterioration. We also identify several significant novel predictors of COVID-19 mortality with equivalent or greater predictive value than established high-risk comorbidities, such as detailed anthropometrics and prior acute kidney failure, urinary tract infection, and pneumonias. The model design and feature selection enables utility in outpatient settings. Possible applications include supporting individual-level risk profiling and monitoring disease progression across patients with COVID-19 at-scale, especially in hospital-at-home settings. Nature Publishing Group UK 2021-08-19 /pmc/articles/PMC8376891/ /pubmed/34413324 http://dx.doi.org/10.1038/s41598-021-95136-x Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Dabbah, Mohammad A.
Reed, Angus B.
Booth, Adam T. C.
Yassaee, Arrash
Despotovic, Aleksa
Klasmer, Benjamin
Binning, Emily
Aral, Mert
Plans, David
Morelli, Davide
Labrique, Alain B.
Mohan, Diwakar
Machine learning approach to dynamic risk modeling of mortality in COVID-19: a UK Biobank study
title Machine learning approach to dynamic risk modeling of mortality in COVID-19: a UK Biobank study
title_full Machine learning approach to dynamic risk modeling of mortality in COVID-19: a UK Biobank study
title_fullStr Machine learning approach to dynamic risk modeling of mortality in COVID-19: a UK Biobank study
title_full_unstemmed Machine learning approach to dynamic risk modeling of mortality in COVID-19: a UK Biobank study
title_short Machine learning approach to dynamic risk modeling of mortality in COVID-19: a UK Biobank study
title_sort machine learning approach to dynamic risk modeling of mortality in covid-19: a uk biobank study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8376891/
https://www.ncbi.nlm.nih.gov/pubmed/34413324
http://dx.doi.org/10.1038/s41598-021-95136-x
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