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RNA-seq data of tea mosquito bugs, Helopeltis bradyi, antennae

Tea Mosquito Bug (TMB), Helopeltis bradyi (Hemiptera: Miridae) is one of the major pest infesting tea and cocoa plantations worldwide. Developing olfaction-based control methods was urges as an alternative to commonly used but non-environmental friendly chemical pesticides. However, the molecular me...

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Autores principales: Soffan, Alan, Subandiyah, Siti, Wijonarko, Arman, Sawitri, Widhi Dyah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8377556/
https://www.ncbi.nlm.nih.gov/pubmed/34458528
http://dx.doi.org/10.1016/j.dib.2021.107302
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author Soffan, Alan
Subandiyah, Siti
Wijonarko, Arman
Sawitri, Widhi Dyah
author_facet Soffan, Alan
Subandiyah, Siti
Wijonarko, Arman
Sawitri, Widhi Dyah
author_sort Soffan, Alan
collection PubMed
description Tea Mosquito Bug (TMB), Helopeltis bradyi (Hemiptera: Miridae) is one of the major pest infesting tea and cocoa plantations worldwide. Developing olfaction-based control methods was urges as an alternative to commonly used but non-environmental friendly chemical pesticides. However, the molecular mechanisms underlying TMB reception mechanism are still lacking. Here, we collected a pooled male and female TMB antennae for RNA extraction followed by sequencing using the BGISEQ-500 platform and de novo assembly. TMB antennae RNA-seq data yielded 32,142 unigenes with N50 and GC (%) were 2322 and 40.25; subsequently. The RNA-seq data are available in GenBank Sequence Read Archive (SRA) database with accession number SRR13327229. De novo transcriptome analysis had identified several genes involved in TMB odorant reception includes; 39 OBPs (odorant binding proteins), 10 CSPs (chemosensory proteins), 81 Ors (odorant receptors), 1 Orcos (co-receptors), 9 SNMPs (sensory neuron membrane proteins), 3 GRs (gustatory receptors) and 4 IRs (ionotropic receptors). Our study presents the first RNA seq for TMB antennae, which serve the primary molecular resources data, which will facilitate further research to develop olfaction-based control methods, potentially contribute to TMB management strategies.
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spelling pubmed-83775562021-08-26 RNA-seq data of tea mosquito bugs, Helopeltis bradyi, antennae Soffan, Alan Subandiyah, Siti Wijonarko, Arman Sawitri, Widhi Dyah Data Brief Data Article Tea Mosquito Bug (TMB), Helopeltis bradyi (Hemiptera: Miridae) is one of the major pest infesting tea and cocoa plantations worldwide. Developing olfaction-based control methods was urges as an alternative to commonly used but non-environmental friendly chemical pesticides. However, the molecular mechanisms underlying TMB reception mechanism are still lacking. Here, we collected a pooled male and female TMB antennae for RNA extraction followed by sequencing using the BGISEQ-500 platform and de novo assembly. TMB antennae RNA-seq data yielded 32,142 unigenes with N50 and GC (%) were 2322 and 40.25; subsequently. The RNA-seq data are available in GenBank Sequence Read Archive (SRA) database with accession number SRR13327229. De novo transcriptome analysis had identified several genes involved in TMB odorant reception includes; 39 OBPs (odorant binding proteins), 10 CSPs (chemosensory proteins), 81 Ors (odorant receptors), 1 Orcos (co-receptors), 9 SNMPs (sensory neuron membrane proteins), 3 GRs (gustatory receptors) and 4 IRs (ionotropic receptors). Our study presents the first RNA seq for TMB antennae, which serve the primary molecular resources data, which will facilitate further research to develop olfaction-based control methods, potentially contribute to TMB management strategies. Elsevier 2021-08-16 /pmc/articles/PMC8377556/ /pubmed/34458528 http://dx.doi.org/10.1016/j.dib.2021.107302 Text en © 2021 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data Article
Soffan, Alan
Subandiyah, Siti
Wijonarko, Arman
Sawitri, Widhi Dyah
RNA-seq data of tea mosquito bugs, Helopeltis bradyi, antennae
title RNA-seq data of tea mosquito bugs, Helopeltis bradyi, antennae
title_full RNA-seq data of tea mosquito bugs, Helopeltis bradyi, antennae
title_fullStr RNA-seq data of tea mosquito bugs, Helopeltis bradyi, antennae
title_full_unstemmed RNA-seq data of tea mosquito bugs, Helopeltis bradyi, antennae
title_short RNA-seq data of tea mosquito bugs, Helopeltis bradyi, antennae
title_sort rna-seq data of tea mosquito bugs, helopeltis bradyi, antennae
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8377556/
https://www.ncbi.nlm.nih.gov/pubmed/34458528
http://dx.doi.org/10.1016/j.dib.2021.107302
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