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Integrated bioinformatics analysis of the NEDD4 family reveals a prognostic value of NEDD4L in clear-cell renal cell cancer
The members of the Nedd4-like E3 family participate in various biological processes. However, their role in clear cell renal cell carcinoma (ccRCC) is not clear. This study systematically analyzed the Nedd4-like E3 family members in ccRCC data sets from multiple publicly available databases. NEDD4L...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8378337/ https://www.ncbi.nlm.nih.gov/pubmed/34458018 http://dx.doi.org/10.7717/peerj.11880 |
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author | Zhao, Hui Zhang, Junjun Fu, Xiaoliang Mao, Dongdong Qi, Xuesen Liang, Shuai Meng, Gang Song, Zewen Yang, Ru Guo, Zhenni Tong, Binghua Sun, Meiqing Zuo, Baile Li, Guoyin |
author_facet | Zhao, Hui Zhang, Junjun Fu, Xiaoliang Mao, Dongdong Qi, Xuesen Liang, Shuai Meng, Gang Song, Zewen Yang, Ru Guo, Zhenni Tong, Binghua Sun, Meiqing Zuo, Baile Li, Guoyin |
author_sort | Zhao, Hui |
collection | PubMed |
description | The members of the Nedd4-like E3 family participate in various biological processes. However, their role in clear cell renal cell carcinoma (ccRCC) is not clear. This study systematically analyzed the Nedd4-like E3 family members in ccRCC data sets from multiple publicly available databases. NEDD4L was identified as the only NEDD4 family member differentially expressed in ccRCC compared with normal samples. Bioinformatics tools were used to characterize the function of NEDD4L in ccRCC. It indicated that NEDD4L might regulate cellular energy metabolism by co-expression analysis, and subsequent gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. A prognostic model developed by the LASSO Cox regression method showed a relatively good predictive value in training and testing data sets. The result revealed that NEDD4L was associated with biosynthesis and metabolism of ccRCC. Since NEDD4L is downregulated and dysregulation of metabolism is involved in tumor progression, NEDD4L might be a potential therapeutic target in ccRCC. |
format | Online Article Text |
id | pubmed-8378337 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-83783372021-08-27 Integrated bioinformatics analysis of the NEDD4 family reveals a prognostic value of NEDD4L in clear-cell renal cell cancer Zhao, Hui Zhang, Junjun Fu, Xiaoliang Mao, Dongdong Qi, Xuesen Liang, Shuai Meng, Gang Song, Zewen Yang, Ru Guo, Zhenni Tong, Binghua Sun, Meiqing Zuo, Baile Li, Guoyin PeerJ Bioinformatics The members of the Nedd4-like E3 family participate in various biological processes. However, their role in clear cell renal cell carcinoma (ccRCC) is not clear. This study systematically analyzed the Nedd4-like E3 family members in ccRCC data sets from multiple publicly available databases. NEDD4L was identified as the only NEDD4 family member differentially expressed in ccRCC compared with normal samples. Bioinformatics tools were used to characterize the function of NEDD4L in ccRCC. It indicated that NEDD4L might regulate cellular energy metabolism by co-expression analysis, and subsequent gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. A prognostic model developed by the LASSO Cox regression method showed a relatively good predictive value in training and testing data sets. The result revealed that NEDD4L was associated with biosynthesis and metabolism of ccRCC. Since NEDD4L is downregulated and dysregulation of metabolism is involved in tumor progression, NEDD4L might be a potential therapeutic target in ccRCC. PeerJ Inc. 2021-08-17 /pmc/articles/PMC8378337/ /pubmed/34458018 http://dx.doi.org/10.7717/peerj.11880 Text en ©2021 Zhao et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Zhao, Hui Zhang, Junjun Fu, Xiaoliang Mao, Dongdong Qi, Xuesen Liang, Shuai Meng, Gang Song, Zewen Yang, Ru Guo, Zhenni Tong, Binghua Sun, Meiqing Zuo, Baile Li, Guoyin Integrated bioinformatics analysis of the NEDD4 family reveals a prognostic value of NEDD4L in clear-cell renal cell cancer |
title | Integrated bioinformatics analysis of the NEDD4 family reveals a prognostic value of NEDD4L in clear-cell renal cell cancer |
title_full | Integrated bioinformatics analysis of the NEDD4 family reveals a prognostic value of NEDD4L in clear-cell renal cell cancer |
title_fullStr | Integrated bioinformatics analysis of the NEDD4 family reveals a prognostic value of NEDD4L in clear-cell renal cell cancer |
title_full_unstemmed | Integrated bioinformatics analysis of the NEDD4 family reveals a prognostic value of NEDD4L in clear-cell renal cell cancer |
title_short | Integrated bioinformatics analysis of the NEDD4 family reveals a prognostic value of NEDD4L in clear-cell renal cell cancer |
title_sort | integrated bioinformatics analysis of the nedd4 family reveals a prognostic value of nedd4l in clear-cell renal cell cancer |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8378337/ https://www.ncbi.nlm.nih.gov/pubmed/34458018 http://dx.doi.org/10.7717/peerj.11880 |
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