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The Breeding Information Management System (BIMS): an online resource for crop breeding

In this era of big data, breeding programs are producing ever larger amounts of data. This necessitates access to efficient management systems to keep track of cross, performance, pedigree, geographical and image-based data, as well as genotyping data. In this article, we report the progress on the...

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Autores principales: Jung, Sook, Lee, Taein, Gasic, Ksenija, Campbell, B. Todd, Yu, Jing, Humann, Jodi, Ru, Sushan, Edge-Garza, Daniel, Hough, Heidi, Main, Dorrie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8378516/
https://www.ncbi.nlm.nih.gov/pubmed/34415997
http://dx.doi.org/10.1093/database/baab054
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author Jung, Sook
Lee, Taein
Gasic, Ksenija
Campbell, B. Todd
Yu, Jing
Humann, Jodi
Ru, Sushan
Edge-Garza, Daniel
Hough, Heidi
Main, Dorrie
author_facet Jung, Sook
Lee, Taein
Gasic, Ksenija
Campbell, B. Todd
Yu, Jing
Humann, Jodi
Ru, Sushan
Edge-Garza, Daniel
Hough, Heidi
Main, Dorrie
author_sort Jung, Sook
collection PubMed
description In this era of big data, breeding programs are producing ever larger amounts of data. This necessitates access to efficient management systems to keep track of cross, performance, pedigree, geographical and image-based data, as well as genotyping data. In this article, we report the progress on the Breeding Information Management System (BIMS), a free, secure and online breeding management system that allows breeders to store, manage, archive and analyze their private breeding data. BIMS is the first publicly available database system that enables individual breeders to integrate their private phenotypic and genotypic data with public data and, at the same time, have complete control of their own breeding data along with access to tools such as data import/export, data analysis and data archiving. The integration of breeding data with publicly available genomic and genetic data enhances genetic understanding of important traits and maximizes the marker-assisted breeding utility for breeders and allied scientists. BIMS incorporates the use of the Android App Field Book, open-source phenotype data collection software for phones and tablets that allows breeders to replace hard copy field books, thus alleviating the possibility of transcription errors while providing faster access to the collected data. BIMS comes with training materials and support for individual or small group training and is currently implemented in the Genome Database for Rosaceae, CottonGEN, the Citrus Genome Database, the Pulse Crop Database, and the Genome Database for Vaccinium. Database URLs: (https://www.rosaceae.org/), (https://www.cottongen.org/), (https://www.citrusgenomedb.org/), (https://www.pulsedb.org/) and (https://www.vaccinium.org/)
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spelling pubmed-83785162021-08-23 The Breeding Information Management System (BIMS): an online resource for crop breeding Jung, Sook Lee, Taein Gasic, Ksenija Campbell, B. Todd Yu, Jing Humann, Jodi Ru, Sushan Edge-Garza, Daniel Hough, Heidi Main, Dorrie Database (Oxford) Original Article In this era of big data, breeding programs are producing ever larger amounts of data. This necessitates access to efficient management systems to keep track of cross, performance, pedigree, geographical and image-based data, as well as genotyping data. In this article, we report the progress on the Breeding Information Management System (BIMS), a free, secure and online breeding management system that allows breeders to store, manage, archive and analyze their private breeding data. BIMS is the first publicly available database system that enables individual breeders to integrate their private phenotypic and genotypic data with public data and, at the same time, have complete control of their own breeding data along with access to tools such as data import/export, data analysis and data archiving. The integration of breeding data with publicly available genomic and genetic data enhances genetic understanding of important traits and maximizes the marker-assisted breeding utility for breeders and allied scientists. BIMS incorporates the use of the Android App Field Book, open-source phenotype data collection software for phones and tablets that allows breeders to replace hard copy field books, thus alleviating the possibility of transcription errors while providing faster access to the collected data. BIMS comes with training materials and support for individual or small group training and is currently implemented in the Genome Database for Rosaceae, CottonGEN, the Citrus Genome Database, the Pulse Crop Database, and the Genome Database for Vaccinium. Database URLs: (https://www.rosaceae.org/), (https://www.cottongen.org/), (https://www.citrusgenomedb.org/), (https://www.pulsedb.org/) and (https://www.vaccinium.org/) Oxford University Press 2021-08-20 /pmc/articles/PMC8378516/ /pubmed/34415997 http://dx.doi.org/10.1093/database/baab054 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Jung, Sook
Lee, Taein
Gasic, Ksenija
Campbell, B. Todd
Yu, Jing
Humann, Jodi
Ru, Sushan
Edge-Garza, Daniel
Hough, Heidi
Main, Dorrie
The Breeding Information Management System (BIMS): an online resource for crop breeding
title The Breeding Information Management System (BIMS): an online resource for crop breeding
title_full The Breeding Information Management System (BIMS): an online resource for crop breeding
title_fullStr The Breeding Information Management System (BIMS): an online resource for crop breeding
title_full_unstemmed The Breeding Information Management System (BIMS): an online resource for crop breeding
title_short The Breeding Information Management System (BIMS): an online resource for crop breeding
title_sort breeding information management system (bims): an online resource for crop breeding
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8378516/
https://www.ncbi.nlm.nih.gov/pubmed/34415997
http://dx.doi.org/10.1093/database/baab054
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