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Machine Learning Prediction of Death in Critically Ill Patients With Coronavirus Disease 2019

Critically ill patients with coronavirus disease 2019 have variable mortality. Risk scores could improve care and be used for prognostic enrichment in trials. We aimed to compare machine learning algorithms and develop a simple tool for predicting 28-day mortality in ICU patients with coronavirus di...

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Autores principales: Churpek, Matthew M., Gupta, Shruti, Spicer, Alexandra B., Hayek, Salim S., Srivastava, Anand, Chan, Lili, Melamed, Michal L., Brenner, Samantha K., Radbel, Jared, Madhani-Lovely, Farah, Bhatraju, Pavan K., Bansal, Anip, Green, Adam, Goyal, Nitender, Shaefi, Shahzad, Parikh, Chirag R., Semler, Matthew W., Leaf, David E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8378790/
https://www.ncbi.nlm.nih.gov/pubmed/34476402
http://dx.doi.org/10.1097/CCE.0000000000000515
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author Churpek, Matthew M.
Gupta, Shruti
Spicer, Alexandra B.
Hayek, Salim S.
Srivastava, Anand
Chan, Lili
Melamed, Michal L.
Brenner, Samantha K.
Radbel, Jared
Madhani-Lovely, Farah
Bhatraju, Pavan K.
Bansal, Anip
Green, Adam
Goyal, Nitender
Shaefi, Shahzad
Parikh, Chirag R.
Semler, Matthew W.
Leaf, David E.
author_facet Churpek, Matthew M.
Gupta, Shruti
Spicer, Alexandra B.
Hayek, Salim S.
Srivastava, Anand
Chan, Lili
Melamed, Michal L.
Brenner, Samantha K.
Radbel, Jared
Madhani-Lovely, Farah
Bhatraju, Pavan K.
Bansal, Anip
Green, Adam
Goyal, Nitender
Shaefi, Shahzad
Parikh, Chirag R.
Semler, Matthew W.
Leaf, David E.
author_sort Churpek, Matthew M.
collection PubMed
description Critically ill patients with coronavirus disease 2019 have variable mortality. Risk scores could improve care and be used for prognostic enrichment in trials. We aimed to compare machine learning algorithms and develop a simple tool for predicting 28-day mortality in ICU patients with coronavirus disease 2019. DESIGN: This was an observational study of adult patients with coronavirus disease 2019. The primary outcome was 28-day inhospital mortality. Machine learning models and a simple tool were derived using variables from the first 48 hours of ICU admission and validated externally in independent sites and temporally with more recent admissions. Models were compared with a modified Sequential Organ Failure Assessment score, National Early Warning Score, and CURB-65 using the area under the receiver operating characteristic curve and calibration. SETTING: Sixty-eight U.S. ICUs. PATIENTS: Adults with coronavirus disease 2019 admitted to 68 ICUs in the United States between March 4, 2020, and June 29, 2020. INTERVENTIONS: None. MEASUREMENTS AND MAIN RESULTS: The study included 5,075 patients, 1,846 (36.4%) of whom died by day 28. eXtreme Gradient Boosting had the highest area under the receiver operating characteristic curve in external validation (0.81) and was well-calibrated, while k-nearest neighbors were the lowest performing machine learning algorithm (area under the receiver operating characteristic curve 0.69). Findings were similar with temporal validation. The simple tool, which was created using the most important features from the eXtreme Gradient Boosting model, had a significantly higher area under the receiver operating characteristic curve in external validation (0.78) than the Sequential Organ Failure Assessment score (0.69), National Early Warning Score (0.60), and CURB-65 (0.65; p < 0.05 for all comparisons). Age, number of ICU beds, creatinine, lactate, arterial pH, and Pao(2)/Fio(2) ratio were the most important predictors in the eXtreme Gradient Boosting model. CONCLUSIONS: eXtreme Gradient Boosting had the highest discrimination overall, and our simple tool had higher discrimination than a modified Sequential Organ Failure Assessment score, National Early Warning Score, and CURB-65 on external validation. These models could be used to improve triage decisions and clinical trial enrichment.
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spelling pubmed-83787902021-09-01 Machine Learning Prediction of Death in Critically Ill Patients With Coronavirus Disease 2019 Churpek, Matthew M. Gupta, Shruti Spicer, Alexandra B. Hayek, Salim S. Srivastava, Anand Chan, Lili Melamed, Michal L. Brenner, Samantha K. Radbel, Jared Madhani-Lovely, Farah Bhatraju, Pavan K. Bansal, Anip Green, Adam Goyal, Nitender Shaefi, Shahzad Parikh, Chirag R. Semler, Matthew W. Leaf, David E. Crit Care Explor Original Clinical Report Critically ill patients with coronavirus disease 2019 have variable mortality. Risk scores could improve care and be used for prognostic enrichment in trials. We aimed to compare machine learning algorithms and develop a simple tool for predicting 28-day mortality in ICU patients with coronavirus disease 2019. DESIGN: This was an observational study of adult patients with coronavirus disease 2019. The primary outcome was 28-day inhospital mortality. Machine learning models and a simple tool were derived using variables from the first 48 hours of ICU admission and validated externally in independent sites and temporally with more recent admissions. Models were compared with a modified Sequential Organ Failure Assessment score, National Early Warning Score, and CURB-65 using the area under the receiver operating characteristic curve and calibration. SETTING: Sixty-eight U.S. ICUs. PATIENTS: Adults with coronavirus disease 2019 admitted to 68 ICUs in the United States between March 4, 2020, and June 29, 2020. INTERVENTIONS: None. MEASUREMENTS AND MAIN RESULTS: The study included 5,075 patients, 1,846 (36.4%) of whom died by day 28. eXtreme Gradient Boosting had the highest area under the receiver operating characteristic curve in external validation (0.81) and was well-calibrated, while k-nearest neighbors were the lowest performing machine learning algorithm (area under the receiver operating characteristic curve 0.69). Findings were similar with temporal validation. The simple tool, which was created using the most important features from the eXtreme Gradient Boosting model, had a significantly higher area under the receiver operating characteristic curve in external validation (0.78) than the Sequential Organ Failure Assessment score (0.69), National Early Warning Score (0.60), and CURB-65 (0.65; p < 0.05 for all comparisons). Age, number of ICU beds, creatinine, lactate, arterial pH, and Pao(2)/Fio(2) ratio were the most important predictors in the eXtreme Gradient Boosting model. CONCLUSIONS: eXtreme Gradient Boosting had the highest discrimination overall, and our simple tool had higher discrimination than a modified Sequential Organ Failure Assessment score, National Early Warning Score, and CURB-65 on external validation. These models could be used to improve triage decisions and clinical trial enrichment. Lippincott Williams & Wilkins 2021-08-19 /pmc/articles/PMC8378790/ /pubmed/34476402 http://dx.doi.org/10.1097/CCE.0000000000000515 Text en Copyright © 2021 The Authors. Published by Wolters Kluwer Health, Inc. on behalf of the Society of Critical Care Medicine. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) , where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal.
spellingShingle Original Clinical Report
Churpek, Matthew M.
Gupta, Shruti
Spicer, Alexandra B.
Hayek, Salim S.
Srivastava, Anand
Chan, Lili
Melamed, Michal L.
Brenner, Samantha K.
Radbel, Jared
Madhani-Lovely, Farah
Bhatraju, Pavan K.
Bansal, Anip
Green, Adam
Goyal, Nitender
Shaefi, Shahzad
Parikh, Chirag R.
Semler, Matthew W.
Leaf, David E.
Machine Learning Prediction of Death in Critically Ill Patients With Coronavirus Disease 2019
title Machine Learning Prediction of Death in Critically Ill Patients With Coronavirus Disease 2019
title_full Machine Learning Prediction of Death in Critically Ill Patients With Coronavirus Disease 2019
title_fullStr Machine Learning Prediction of Death in Critically Ill Patients With Coronavirus Disease 2019
title_full_unstemmed Machine Learning Prediction of Death in Critically Ill Patients With Coronavirus Disease 2019
title_short Machine Learning Prediction of Death in Critically Ill Patients With Coronavirus Disease 2019
title_sort machine learning prediction of death in critically ill patients with coronavirus disease 2019
topic Original Clinical Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8378790/
https://www.ncbi.nlm.nih.gov/pubmed/34476402
http://dx.doi.org/10.1097/CCE.0000000000000515
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