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Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes

Histone lysine methylations have primarily been linked to selective recruitment of reader or effector proteins that subsequently modify chromatin regions and mediate genome functions. Here, we describe a divergent role for histone H4 lysine 20 mono-methylation (H4K20me1) and demonstrate that it dire...

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Autores principales: Shoaib, Muhammad, Chen, Qinming, Shi, Xiangyan, Nair, Nidhi, Prasanna, Chinmayi, Yang, Renliang, Walter, David, Frederiksen, Klaus S., Einarsson, Hjorleifur, Svensson, J. Peter, Liu, Chuan Fa, Ekwall, Karl, Lerdrup, Mads, Nordenskiöld, Lars, Sørensen, Claus S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8379281/
https://www.ncbi.nlm.nih.gov/pubmed/34417450
http://dx.doi.org/10.1038/s41467-021-25051-2
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author Shoaib, Muhammad
Chen, Qinming
Shi, Xiangyan
Nair, Nidhi
Prasanna, Chinmayi
Yang, Renliang
Walter, David
Frederiksen, Klaus S.
Einarsson, Hjorleifur
Svensson, J. Peter
Liu, Chuan Fa
Ekwall, Karl
Lerdrup, Mads
Nordenskiöld, Lars
Sørensen, Claus S.
author_facet Shoaib, Muhammad
Chen, Qinming
Shi, Xiangyan
Nair, Nidhi
Prasanna, Chinmayi
Yang, Renliang
Walter, David
Frederiksen, Klaus S.
Einarsson, Hjorleifur
Svensson, J. Peter
Liu, Chuan Fa
Ekwall, Karl
Lerdrup, Mads
Nordenskiöld, Lars
Sørensen, Claus S.
author_sort Shoaib, Muhammad
collection PubMed
description Histone lysine methylations have primarily been linked to selective recruitment of reader or effector proteins that subsequently modify chromatin regions and mediate genome functions. Here, we describe a divergent role for histone H4 lysine 20 mono-methylation (H4K20me1) and demonstrate that it directly facilitates chromatin openness and accessibility by disrupting chromatin folding. Thus, accumulation of H4K20me1 demarcates highly accessible chromatin at genes, and this is maintained throughout the cell cycle. In vitro, H4K20me1-containing nucleosomal arrays with nucleosome repeat lengths (NRL) of 187 and 197 are less compact than unmethylated (H4K20me0) or trimethylated (H4K20me3) arrays. Concordantly, and in contrast to trimethylated and unmethylated tails, solid-state NMR data shows that H4K20 mono-methylation changes the H4 conformational state and leads to more dynamic histone H4-tails. Notably, the increased chromatin accessibility mediated by H4K20me1 facilitates gene expression, particularly of housekeeping genes. Altogether, we show how the methylation state of a single histone H4 residue operates as a focal point in chromatin structure control. While H4K20me1 directly promotes chromatin openness at highly transcribed genes, it also serves as a stepping-stone for H4K20me3-dependent chromatin compaction.
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spelling pubmed-83792812021-09-22 Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes Shoaib, Muhammad Chen, Qinming Shi, Xiangyan Nair, Nidhi Prasanna, Chinmayi Yang, Renliang Walter, David Frederiksen, Klaus S. Einarsson, Hjorleifur Svensson, J. Peter Liu, Chuan Fa Ekwall, Karl Lerdrup, Mads Nordenskiöld, Lars Sørensen, Claus S. Nat Commun Article Histone lysine methylations have primarily been linked to selective recruitment of reader or effector proteins that subsequently modify chromatin regions and mediate genome functions. Here, we describe a divergent role for histone H4 lysine 20 mono-methylation (H4K20me1) and demonstrate that it directly facilitates chromatin openness and accessibility by disrupting chromatin folding. Thus, accumulation of H4K20me1 demarcates highly accessible chromatin at genes, and this is maintained throughout the cell cycle. In vitro, H4K20me1-containing nucleosomal arrays with nucleosome repeat lengths (NRL) of 187 and 197 are less compact than unmethylated (H4K20me0) or trimethylated (H4K20me3) arrays. Concordantly, and in contrast to trimethylated and unmethylated tails, solid-state NMR data shows that H4K20 mono-methylation changes the H4 conformational state and leads to more dynamic histone H4-tails. Notably, the increased chromatin accessibility mediated by H4K20me1 facilitates gene expression, particularly of housekeeping genes. Altogether, we show how the methylation state of a single histone H4 residue operates as a focal point in chromatin structure control. While H4K20me1 directly promotes chromatin openness at highly transcribed genes, it also serves as a stepping-stone for H4K20me3-dependent chromatin compaction. Nature Publishing Group UK 2021-08-20 /pmc/articles/PMC8379281/ /pubmed/34417450 http://dx.doi.org/10.1038/s41467-021-25051-2 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Shoaib, Muhammad
Chen, Qinming
Shi, Xiangyan
Nair, Nidhi
Prasanna, Chinmayi
Yang, Renliang
Walter, David
Frederiksen, Klaus S.
Einarsson, Hjorleifur
Svensson, J. Peter
Liu, Chuan Fa
Ekwall, Karl
Lerdrup, Mads
Nordenskiöld, Lars
Sørensen, Claus S.
Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes
title Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes
title_full Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes
title_fullStr Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes
title_full_unstemmed Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes
title_short Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes
title_sort histone h4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8379281/
https://www.ncbi.nlm.nih.gov/pubmed/34417450
http://dx.doi.org/10.1038/s41467-021-25051-2
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