Cargando…

The dataset of predicted trypsin serine peptidases and their inactive homologs in Tenebrio molitor transcriptomes

Tenebrio molitor is an important coleopteran model insect and agricultural pest from the Tenebrionidae family. We used RNA-Seq transcriptome data from T. molitor to annotate trypsin-like sequences from the chymotrypsin S1 family of serine peptidases, including sequences of active serine peptidases (...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhiganov, Nikita I., Tereshchenkova, Valeriia F., Oppert, Brenda, Filippova, Irina Y., Belyaeva, Nataliya V., Dunaevsky, Yakov E., Belozersky, Mikhail A., Elpidina, Elena N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8379613/
https://www.ncbi.nlm.nih.gov/pubmed/34458527
http://dx.doi.org/10.1016/j.dib.2021.107301
_version_ 1783741043185811456
author Zhiganov, Nikita I.
Tereshchenkova, Valeriia F.
Oppert, Brenda
Filippova, Irina Y.
Belyaeva, Nataliya V.
Dunaevsky, Yakov E.
Belozersky, Mikhail A.
Elpidina, Elena N.
author_facet Zhiganov, Nikita I.
Tereshchenkova, Valeriia F.
Oppert, Brenda
Filippova, Irina Y.
Belyaeva, Nataliya V.
Dunaevsky, Yakov E.
Belozersky, Mikhail A.
Elpidina, Elena N.
author_sort Zhiganov, Nikita I.
collection PubMed
description Tenebrio molitor is an important coleopteran model insect and agricultural pest from the Tenebrionidae family. We used RNA-Seq transcriptome data from T. molitor to annotate trypsin-like sequences from the chymotrypsin S1 family of serine peptidases, including sequences of active serine peptidases (SerP) and their inactive homologs (SerPH) in T. molitor transcriptomes. A total of 63 S1 family tryspin-like serine peptidase sequences were de novo assembled. Among the sequences, 58 were predicted to be active trypsins and five inactive SerPH. The length of preproenzyme and mature form of the predicted enzyme, position of signal peptide and proenzyme cleavage sites, molecular mass, active site and S1 substrate binding subsite residues, and transmembrane and regulatory domains were analyzed using bioinformatic tools. The data can be used for further physiological, biochemical, and phylogenetic study of tenebrionid pests and other animal systems.
format Online
Article
Text
id pubmed-8379613
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-83796132021-08-27 The dataset of predicted trypsin serine peptidases and their inactive homologs in Tenebrio molitor transcriptomes Zhiganov, Nikita I. Tereshchenkova, Valeriia F. Oppert, Brenda Filippova, Irina Y. Belyaeva, Nataliya V. Dunaevsky, Yakov E. Belozersky, Mikhail A. Elpidina, Elena N. Data Brief Data Article Tenebrio molitor is an important coleopteran model insect and agricultural pest from the Tenebrionidae family. We used RNA-Seq transcriptome data from T. molitor to annotate trypsin-like sequences from the chymotrypsin S1 family of serine peptidases, including sequences of active serine peptidases (SerP) and their inactive homologs (SerPH) in T. molitor transcriptomes. A total of 63 S1 family tryspin-like serine peptidase sequences were de novo assembled. Among the sequences, 58 were predicted to be active trypsins and five inactive SerPH. The length of preproenzyme and mature form of the predicted enzyme, position of signal peptide and proenzyme cleavage sites, molecular mass, active site and S1 substrate binding subsite residues, and transmembrane and regulatory domains were analyzed using bioinformatic tools. The data can be used for further physiological, biochemical, and phylogenetic study of tenebrionid pests and other animal systems. Elsevier 2021-08-16 /pmc/articles/PMC8379613/ /pubmed/34458527 http://dx.doi.org/10.1016/j.dib.2021.107301 Text en © 2021 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data Article
Zhiganov, Nikita I.
Tereshchenkova, Valeriia F.
Oppert, Brenda
Filippova, Irina Y.
Belyaeva, Nataliya V.
Dunaevsky, Yakov E.
Belozersky, Mikhail A.
Elpidina, Elena N.
The dataset of predicted trypsin serine peptidases and their inactive homologs in Tenebrio molitor transcriptomes
title The dataset of predicted trypsin serine peptidases and their inactive homologs in Tenebrio molitor transcriptomes
title_full The dataset of predicted trypsin serine peptidases and their inactive homologs in Tenebrio molitor transcriptomes
title_fullStr The dataset of predicted trypsin serine peptidases and their inactive homologs in Tenebrio molitor transcriptomes
title_full_unstemmed The dataset of predicted trypsin serine peptidases and their inactive homologs in Tenebrio molitor transcriptomes
title_short The dataset of predicted trypsin serine peptidases and their inactive homologs in Tenebrio molitor transcriptomes
title_sort dataset of predicted trypsin serine peptidases and their inactive homologs in tenebrio molitor transcriptomes
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8379613/
https://www.ncbi.nlm.nih.gov/pubmed/34458527
http://dx.doi.org/10.1016/j.dib.2021.107301
work_keys_str_mv AT zhiganovnikitai thedatasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT tereshchenkovavaleriiaf thedatasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT oppertbrenda thedatasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT filippovairinay thedatasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT belyaevanataliyav thedatasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT dunaevskyyakove thedatasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT belozerskymikhaila thedatasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT elpidinaelenan thedatasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT zhiganovnikitai datasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT tereshchenkovavaleriiaf datasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT oppertbrenda datasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT filippovairinay datasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT belyaevanataliyav datasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT dunaevskyyakove datasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT belozerskymikhaila datasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes
AT elpidinaelenan datasetofpredictedtrypsinserinepeptidasesandtheirinactivehomologsintenebriomolitortranscriptomes