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Viral outbreaks detection and surveillance using wastewater-based epidemiology, viral air sampling, and machine learning techniques: A comprehensive review and outlook

A viral outbreak is a global challenge that affects public health and safety. The coronavirus disease 2019 (COVID-19) has been spreading globally, affecting millions of people worldwide, and led to significant loss of lives and deterioration of the global economy. The current adverse effects caused...

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Autores principales: Abdeldayem, Omar M., Dabbish, Areeg M., Habashy, Mahmoud M., Mostafa, Mohamed K., Elhefnawy, Mohamed, Amin, Lobna, Al-Sakkari, Eslam G., Ragab, Ahmed, Rene, Eldon R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Published by Elsevier B.V. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8379898/
https://www.ncbi.nlm.nih.gov/pubmed/34525746
http://dx.doi.org/10.1016/j.scitotenv.2021.149834
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author Abdeldayem, Omar M.
Dabbish, Areeg M.
Habashy, Mahmoud M.
Mostafa, Mohamed K.
Elhefnawy, Mohamed
Amin, Lobna
Al-Sakkari, Eslam G.
Ragab, Ahmed
Rene, Eldon R.
author_facet Abdeldayem, Omar M.
Dabbish, Areeg M.
Habashy, Mahmoud M.
Mostafa, Mohamed K.
Elhefnawy, Mohamed
Amin, Lobna
Al-Sakkari, Eslam G.
Ragab, Ahmed
Rene, Eldon R.
author_sort Abdeldayem, Omar M.
collection PubMed
description A viral outbreak is a global challenge that affects public health and safety. The coronavirus disease 2019 (COVID-19) has been spreading globally, affecting millions of people worldwide, and led to significant loss of lives and deterioration of the global economy. The current adverse effects caused by the COVID-19 pandemic demands finding new detection methods for future viral outbreaks. The environment's transmission pathways include and are not limited to air, surface water, and wastewater environments. The wastewater surveillance, known as wastewater-based epidemiology (WBE), can potentially monitor viral outbreaks and provide a complementary clinical testing method. Another investigated outbreak surveillance technique that has not been yet implemented in a sufficient number of studies is the surveillance of Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) in the air. Artificial intelligence (AI) and its related machine learning (ML) and deep learning (DL) technologies are currently emerging techniques for detecting viral outbreaks using global data. To date, there are no reports that illustrate the potential of using WBE with AI to detect viral outbreaks. This study investigates the transmission pathways of SARS-CoV-2 in the environment and provides current updates on the surveillance of viral outbreaks using WBE, viral air sampling, and AI. It also proposes a novel framework based on an ensemble of ML and DL algorithms to provide a beneficial supportive tool for decision-makers. The framework exploits available data from reliable sources to discover meaningful insights and knowledge that allows researchers and practitioners to build efficient methods and protocols that accurately monitor and detect viral outbreaks. The proposed framework could provide early detection of viruses, forecast risk maps and vulnerable areas, and estimate the number of infected citizens.
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spelling pubmed-83798982021-08-23 Viral outbreaks detection and surveillance using wastewater-based epidemiology, viral air sampling, and machine learning techniques: A comprehensive review and outlook Abdeldayem, Omar M. Dabbish, Areeg M. Habashy, Mahmoud M. Mostafa, Mohamed K. Elhefnawy, Mohamed Amin, Lobna Al-Sakkari, Eslam G. Ragab, Ahmed Rene, Eldon R. Sci Total Environ Article A viral outbreak is a global challenge that affects public health and safety. The coronavirus disease 2019 (COVID-19) has been spreading globally, affecting millions of people worldwide, and led to significant loss of lives and deterioration of the global economy. The current adverse effects caused by the COVID-19 pandemic demands finding new detection methods for future viral outbreaks. The environment's transmission pathways include and are not limited to air, surface water, and wastewater environments. The wastewater surveillance, known as wastewater-based epidemiology (WBE), can potentially monitor viral outbreaks and provide a complementary clinical testing method. Another investigated outbreak surveillance technique that has not been yet implemented in a sufficient number of studies is the surveillance of Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) in the air. Artificial intelligence (AI) and its related machine learning (ML) and deep learning (DL) technologies are currently emerging techniques for detecting viral outbreaks using global data. To date, there are no reports that illustrate the potential of using WBE with AI to detect viral outbreaks. This study investigates the transmission pathways of SARS-CoV-2 in the environment and provides current updates on the surveillance of viral outbreaks using WBE, viral air sampling, and AI. It also proposes a novel framework based on an ensemble of ML and DL algorithms to provide a beneficial supportive tool for decision-makers. The framework exploits available data from reliable sources to discover meaningful insights and knowledge that allows researchers and practitioners to build efficient methods and protocols that accurately monitor and detect viral outbreaks. The proposed framework could provide early detection of viruses, forecast risk maps and vulnerable areas, and estimate the number of infected citizens. Published by Elsevier B.V. 2022-01-10 2021-08-21 /pmc/articles/PMC8379898/ /pubmed/34525746 http://dx.doi.org/10.1016/j.scitotenv.2021.149834 Text en Crown Copyright © 2021 Published by Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Abdeldayem, Omar M.
Dabbish, Areeg M.
Habashy, Mahmoud M.
Mostafa, Mohamed K.
Elhefnawy, Mohamed
Amin, Lobna
Al-Sakkari, Eslam G.
Ragab, Ahmed
Rene, Eldon R.
Viral outbreaks detection and surveillance using wastewater-based epidemiology, viral air sampling, and machine learning techniques: A comprehensive review and outlook
title Viral outbreaks detection and surveillance using wastewater-based epidemiology, viral air sampling, and machine learning techniques: A comprehensive review and outlook
title_full Viral outbreaks detection and surveillance using wastewater-based epidemiology, viral air sampling, and machine learning techniques: A comprehensive review and outlook
title_fullStr Viral outbreaks detection and surveillance using wastewater-based epidemiology, viral air sampling, and machine learning techniques: A comprehensive review and outlook
title_full_unstemmed Viral outbreaks detection and surveillance using wastewater-based epidemiology, viral air sampling, and machine learning techniques: A comprehensive review and outlook
title_short Viral outbreaks detection and surveillance using wastewater-based epidemiology, viral air sampling, and machine learning techniques: A comprehensive review and outlook
title_sort viral outbreaks detection and surveillance using wastewater-based epidemiology, viral air sampling, and machine learning techniques: a comprehensive review and outlook
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8379898/
https://www.ncbi.nlm.nih.gov/pubmed/34525746
http://dx.doi.org/10.1016/j.scitotenv.2021.149834
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