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The complete chloroplast genome sequence of Trikeraia hookeri
Trikeraia hookeri is an alpine grass with significant ecological value. Here, the complete chloroplast genome sequence of T. hookeri using Illumina sequencing data was reported. The size of the whole cp genome was 137,696 bp in length, consisting of a pair of inverted repeats (IR 13,755 bp), a large...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8381943/ https://www.ncbi.nlm.nih.gov/pubmed/34435130 http://dx.doi.org/10.1080/23802359.2021.1961621 |
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author | Liu, Demei Ruijuan, Liu Yang, Shihai Li, Xiang Zhang, Yemeng Zhu, Lili Ma, Yushou |
author_facet | Liu, Demei Ruijuan, Liu Yang, Shihai Li, Xiang Zhang, Yemeng Zhu, Lili Ma, Yushou |
author_sort | Liu, Demei |
collection | PubMed |
description | Trikeraia hookeri is an alpine grass with significant ecological value. Here, the complete chloroplast genome sequence of T. hookeri using Illumina sequencing data was reported. The size of the whole cp genome was 137,696 bp in length, consisting of a pair of inverted repeats (IR 13,755 bp), a large single-copy region (LSC 81,613 bp), and a small single-copy region (SSC 28,568 bp). The T. hookeri chloroplast genome encodes 119 genes: 81 mRNA genes, 34 tRNA genes and 4 rRNA genes. The GC content of T. hookeri chloroplast genome was 38.8% and those in LSC, SSC, and IR regions were 36.9, 40.8, and 42.3%, respectively. The maximum-likelihood phylogenetic analysis demonstrated that T. hookeri was most closely related to Stipa lipskyi (NC028444) and Stipa purpurrea (NC029390). Our findings provide fundamental information for further evolutionary and phylogenetic researches of T. hookeri. |
format | Online Article Text |
id | pubmed-8381943 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-83819432021-08-24 The complete chloroplast genome sequence of Trikeraia hookeri Liu, Demei Ruijuan, Liu Yang, Shihai Li, Xiang Zhang, Yemeng Zhu, Lili Ma, Yushou Mitochondrial DNA B Resour Mitogenome Announcement Trikeraia hookeri is an alpine grass with significant ecological value. Here, the complete chloroplast genome sequence of T. hookeri using Illumina sequencing data was reported. The size of the whole cp genome was 137,696 bp in length, consisting of a pair of inverted repeats (IR 13,755 bp), a large single-copy region (LSC 81,613 bp), and a small single-copy region (SSC 28,568 bp). The T. hookeri chloroplast genome encodes 119 genes: 81 mRNA genes, 34 tRNA genes and 4 rRNA genes. The GC content of T. hookeri chloroplast genome was 38.8% and those in LSC, SSC, and IR regions were 36.9, 40.8, and 42.3%, respectively. The maximum-likelihood phylogenetic analysis demonstrated that T. hookeri was most closely related to Stipa lipskyi (NC028444) and Stipa purpurrea (NC029390). Our findings provide fundamental information for further evolutionary and phylogenetic researches of T. hookeri. Taylor & Francis 2021-08-18 /pmc/articles/PMC8381943/ /pubmed/34435130 http://dx.doi.org/10.1080/23802359.2021.1961621 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Liu, Demei Ruijuan, Liu Yang, Shihai Li, Xiang Zhang, Yemeng Zhu, Lili Ma, Yushou The complete chloroplast genome sequence of Trikeraia hookeri |
title | The complete chloroplast genome sequence of Trikeraia hookeri |
title_full | The complete chloroplast genome sequence of Trikeraia hookeri |
title_fullStr | The complete chloroplast genome sequence of Trikeraia hookeri |
title_full_unstemmed | The complete chloroplast genome sequence of Trikeraia hookeri |
title_short | The complete chloroplast genome sequence of Trikeraia hookeri |
title_sort | complete chloroplast genome sequence of trikeraia hookeri |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8381943/ https://www.ncbi.nlm.nih.gov/pubmed/34435130 http://dx.doi.org/10.1080/23802359.2021.1961621 |
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