Cargando…

The complete chloroplast genome sequence of Trikeraia hookeri

Trikeraia hookeri is an alpine grass with significant ecological value. Here, the complete chloroplast genome sequence of T. hookeri using Illumina sequencing data was reported. The size of the whole cp genome was 137,696 bp in length, consisting of a pair of inverted repeats (IR 13,755 bp), a large...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Demei, Ruijuan, Liu, Yang, Shihai, Li, Xiang, Zhang, Yemeng, Zhu, Lili, Ma, Yushou
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8381943/
https://www.ncbi.nlm.nih.gov/pubmed/34435130
http://dx.doi.org/10.1080/23802359.2021.1961621
_version_ 1783741460113260544
author Liu, Demei
Ruijuan, Liu
Yang, Shihai
Li, Xiang
Zhang, Yemeng
Zhu, Lili
Ma, Yushou
author_facet Liu, Demei
Ruijuan, Liu
Yang, Shihai
Li, Xiang
Zhang, Yemeng
Zhu, Lili
Ma, Yushou
author_sort Liu, Demei
collection PubMed
description Trikeraia hookeri is an alpine grass with significant ecological value. Here, the complete chloroplast genome sequence of T. hookeri using Illumina sequencing data was reported. The size of the whole cp genome was 137,696 bp in length, consisting of a pair of inverted repeats (IR 13,755 bp), a large single-copy region (LSC 81,613 bp), and a small single-copy region (SSC 28,568 bp). The T. hookeri chloroplast genome encodes 119 genes: 81 mRNA genes, 34 tRNA genes and 4 rRNA genes. The GC content of T. hookeri chloroplast genome was 38.8% and those in LSC, SSC, and IR regions were 36.9, 40.8, and 42.3%, respectively. The maximum-likelihood phylogenetic analysis demonstrated that T. hookeri was most closely related to Stipa lipskyi (NC028444) and Stipa purpurrea (NC029390). Our findings provide fundamental information for further evolutionary and phylogenetic researches of T. hookeri.
format Online
Article
Text
id pubmed-8381943
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-83819432021-08-24 The complete chloroplast genome sequence of Trikeraia hookeri Liu, Demei Ruijuan, Liu Yang, Shihai Li, Xiang Zhang, Yemeng Zhu, Lili Ma, Yushou Mitochondrial DNA B Resour Mitogenome Announcement Trikeraia hookeri is an alpine grass with significant ecological value. Here, the complete chloroplast genome sequence of T. hookeri using Illumina sequencing data was reported. The size of the whole cp genome was 137,696 bp in length, consisting of a pair of inverted repeats (IR 13,755 bp), a large single-copy region (LSC 81,613 bp), and a small single-copy region (SSC 28,568 bp). The T. hookeri chloroplast genome encodes 119 genes: 81 mRNA genes, 34 tRNA genes and 4 rRNA genes. The GC content of T. hookeri chloroplast genome was 38.8% and those in LSC, SSC, and IR regions were 36.9, 40.8, and 42.3%, respectively. The maximum-likelihood phylogenetic analysis demonstrated that T. hookeri was most closely related to Stipa lipskyi (NC028444) and Stipa purpurrea (NC029390). Our findings provide fundamental information for further evolutionary and phylogenetic researches of T. hookeri. Taylor & Francis 2021-08-18 /pmc/articles/PMC8381943/ /pubmed/34435130 http://dx.doi.org/10.1080/23802359.2021.1961621 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Liu, Demei
Ruijuan, Liu
Yang, Shihai
Li, Xiang
Zhang, Yemeng
Zhu, Lili
Ma, Yushou
The complete chloroplast genome sequence of Trikeraia hookeri
title The complete chloroplast genome sequence of Trikeraia hookeri
title_full The complete chloroplast genome sequence of Trikeraia hookeri
title_fullStr The complete chloroplast genome sequence of Trikeraia hookeri
title_full_unstemmed The complete chloroplast genome sequence of Trikeraia hookeri
title_short The complete chloroplast genome sequence of Trikeraia hookeri
title_sort complete chloroplast genome sequence of trikeraia hookeri
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8381943/
https://www.ncbi.nlm.nih.gov/pubmed/34435130
http://dx.doi.org/10.1080/23802359.2021.1961621
work_keys_str_mv AT liudemei thecompletechloroplastgenomesequenceoftrikeraiahookeri
AT ruijuanliu thecompletechloroplastgenomesequenceoftrikeraiahookeri
AT yangshihai thecompletechloroplastgenomesequenceoftrikeraiahookeri
AT lixiang thecompletechloroplastgenomesequenceoftrikeraiahookeri
AT zhangyemeng thecompletechloroplastgenomesequenceoftrikeraiahookeri
AT zhulili thecompletechloroplastgenomesequenceoftrikeraiahookeri
AT mayushou thecompletechloroplastgenomesequenceoftrikeraiahookeri
AT liudemei completechloroplastgenomesequenceoftrikeraiahookeri
AT ruijuanliu completechloroplastgenomesequenceoftrikeraiahookeri
AT yangshihai completechloroplastgenomesequenceoftrikeraiahookeri
AT lixiang completechloroplastgenomesequenceoftrikeraiahookeri
AT zhangyemeng completechloroplastgenomesequenceoftrikeraiahookeri
AT zhulili completechloroplastgenomesequenceoftrikeraiahookeri
AT mayushou completechloroplastgenomesequenceoftrikeraiahookeri