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Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors
The crystal structure model for potassium triiodidomercurate(II) monohydrate, K[HgI(3)]·H(2)O, based on single-crystal data, was reported 50 years ago [Nyqvist & Johansson (1971 ▸). Acta Chem. Scand. 25, 1615–1629]. We have now redetermined this structure with X-ray diffraction data at 0.70 Å...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8382053/ https://www.ncbi.nlm.nih.gov/pubmed/34513010 http://dx.doi.org/10.1107/S2056989021005582 |
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author | Chocolatl Torres, Misael Bernès, Sylvain Salazar Kuri, Ulises |
author_facet | Chocolatl Torres, Misael Bernès, Sylvain Salazar Kuri, Ulises |
author_sort | Chocolatl Torres, Misael |
collection | PubMed |
description | The crystal structure model for potassium triiodidomercurate(II) monohydrate, K[HgI(3)]·H(2)O, based on single-crystal data, was reported 50 years ago [Nyqvist & Johansson (1971 ▸). Acta Chem. Scand. 25, 1615–1629]. We have now redetermined this structure with X-ray diffraction data at 0.70 Å resolution collected at 153 K using Ag Kα radiation. Combined quantum mechanical methods (ORCA) and computation of non-spherical scattering form factors (NoSpherA2) allowed the refinement of the shape of the water molecule with anisotropic H atoms, despite the presence of heavy elements in the crystal. The refined shape of the water molecule via this Hirshfeld refinement is close to that determined for liquid water by neutron diffraction experiments. Moreover, the Laplacian of the electron density clearly shows how electron density accumulates along the O—H σ-valence bonds in the water molecule. |
format | Online Article Text |
id | pubmed-8382053 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-83820532021-09-09 Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors Chocolatl Torres, Misael Bernès, Sylvain Salazar Kuri, Ulises Acta Crystallogr E Crystallogr Commun Research Communications The crystal structure model for potassium triiodidomercurate(II) monohydrate, K[HgI(3)]·H(2)O, based on single-crystal data, was reported 50 years ago [Nyqvist & Johansson (1971 ▸). Acta Chem. Scand. 25, 1615–1629]. We have now redetermined this structure with X-ray diffraction data at 0.70 Å resolution collected at 153 K using Ag Kα radiation. Combined quantum mechanical methods (ORCA) and computation of non-spherical scattering form factors (NoSpherA2) allowed the refinement of the shape of the water molecule with anisotropic H atoms, despite the presence of heavy elements in the crystal. The refined shape of the water molecule via this Hirshfeld refinement is close to that determined for liquid water by neutron diffraction experiments. Moreover, the Laplacian of the electron density clearly shows how electron density accumulates along the O—H σ-valence bonds in the water molecule. International Union of Crystallography 2021-06-04 /pmc/articles/PMC8382053/ /pubmed/34513010 http://dx.doi.org/10.1107/S2056989021005582 Text en © Chocolatl Torres et al. 2021 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Communications Chocolatl Torres, Misael Bernès, Sylvain Salazar Kuri, Ulises Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors |
title | Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors |
title_full | Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors |
title_fullStr | Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors |
title_full_unstemmed | Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors |
title_short | Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors |
title_sort | refinement of k[hgi(3)]·h(2)o using non-spherical atomic form factors |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8382053/ https://www.ncbi.nlm.nih.gov/pubmed/34513010 http://dx.doi.org/10.1107/S2056989021005582 |
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