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Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors

The crystal structure model for potassium tri­iodido­mercurate(II) monohydrate, K[HgI(3)]·H(2)O, based on single-crystal data, was reported 50 years ago [Nyqvist & Johansson (1971 ▸). Acta Chem. Scand. 25, 1615–1629]. We have now redetermined this structure with X-ray diffraction data at 0.70 Å...

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Autores principales: Chocolatl Torres, Misael, Bernès, Sylvain, Salazar Kuri, Ulises
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8382053/
https://www.ncbi.nlm.nih.gov/pubmed/34513010
http://dx.doi.org/10.1107/S2056989021005582
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author Chocolatl Torres, Misael
Bernès, Sylvain
Salazar Kuri, Ulises
author_facet Chocolatl Torres, Misael
Bernès, Sylvain
Salazar Kuri, Ulises
author_sort Chocolatl Torres, Misael
collection PubMed
description The crystal structure model for potassium tri­iodido­mercurate(II) monohydrate, K[HgI(3)]·H(2)O, based on single-crystal data, was reported 50 years ago [Nyqvist & Johansson (1971 ▸). Acta Chem. Scand. 25, 1615–1629]. We have now redetermined this structure with X-ray diffraction data at 0.70 Å resolution collected at 153 K using Ag Kα radiation. Combined quantum mechanical methods (ORCA) and computation of non-spherical scattering form factors (NoSpherA2) allowed the refinement of the shape of the water mol­ecule with anisotropic H atoms, despite the presence of heavy elements in the crystal. The refined shape of the water mol­ecule via this Hirshfeld refinement is close to that determined for liquid water by neutron diffraction experiments. Moreover, the Laplacian of the electron density clearly shows how electron density accumulates along the O—H σ-valence bonds in the water mol­ecule.
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spelling pubmed-83820532021-09-09 Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors Chocolatl Torres, Misael Bernès, Sylvain Salazar Kuri, Ulises Acta Crystallogr E Crystallogr Commun Research Communications The crystal structure model for potassium tri­iodido­mercurate(II) monohydrate, K[HgI(3)]·H(2)O, based on single-crystal data, was reported 50 years ago [Nyqvist & Johansson (1971 ▸). Acta Chem. Scand. 25, 1615–1629]. We have now redetermined this structure with X-ray diffraction data at 0.70 Å resolution collected at 153 K using Ag Kα radiation. Combined quantum mechanical methods (ORCA) and computation of non-spherical scattering form factors (NoSpherA2) allowed the refinement of the shape of the water mol­ecule with anisotropic H atoms, despite the presence of heavy elements in the crystal. The refined shape of the water mol­ecule via this Hirshfeld refinement is close to that determined for liquid water by neutron diffraction experiments. Moreover, the Laplacian of the electron density clearly shows how electron density accumulates along the O—H σ-valence bonds in the water mol­ecule. International Union of Crystallography 2021-06-04 /pmc/articles/PMC8382053/ /pubmed/34513010 http://dx.doi.org/10.1107/S2056989021005582 Text en © Chocolatl Torres et al. 2021 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Communications
Chocolatl Torres, Misael
Bernès, Sylvain
Salazar Kuri, Ulises
Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors
title Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors
title_full Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors
title_fullStr Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors
title_full_unstemmed Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors
title_short Refinement of K[HgI(3)]·H(2)O using non-spherical atomic form factors
title_sort refinement of k[hgi(3)]·h(2)o using non-spherical atomic form factors
topic Research Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8382053/
https://www.ncbi.nlm.nih.gov/pubmed/34513010
http://dx.doi.org/10.1107/S2056989021005582
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