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Detection of COVID-19 from chest x-ray images using transfer learning

Purpose: The objective of this study is to develop and evaluate a fully automated, deep learning-based method for detection of COVID-19 infection from chest x-ray images. Approach: The proposed model was developed by replacing the final classifier layer in DenseNet201 with a new network consisting o...

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Autores principales: Manokaran, Jenita, Zabihollahy, Fatemeh, Hamilton-Wright, Andrew, Ukwatta, Eranga
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society of Photo-Optical Instrumentation Engineers 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8382139/
https://www.ncbi.nlm.nih.gov/pubmed/34435075
http://dx.doi.org/10.1117/1.JMI.8.S1.017503
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author Manokaran, Jenita
Zabihollahy, Fatemeh
Hamilton-Wright, Andrew
Ukwatta, Eranga
author_facet Manokaran, Jenita
Zabihollahy, Fatemeh
Hamilton-Wright, Andrew
Ukwatta, Eranga
author_sort Manokaran, Jenita
collection PubMed
description Purpose: The objective of this study is to develop and evaluate a fully automated, deep learning-based method for detection of COVID-19 infection from chest x-ray images. Approach: The proposed model was developed by replacing the final classifier layer in DenseNet201 with a new network consisting of global averaging layer, batch normalization layer, a dense layer with ReLU activation, and a final classification layer. Then, we performed an end-to-end training using the initial pretrained weights on all the layers. Our model was trained using a total of 8644 images with 4000 images each in normal and pneumonia cases and 644 in COVID-19 cases representing a large real dataset. The proposed method was evaluated based on accuracy, sensitivity, specificity, ROC curve, and [Formula: see text]-score using a test dataset comprising 1729 images (129 COVID-19, 800 normal, and 800 pneumonia). As a benchmark, we also compared the results of our method with those of seven state-of-the-art pretrained models and with a lightweight CNN architecture designed from scratch. Results: The proposed model based on DenseNet201 was able to achieve an accuracy of 94% in detecting COVID-19 and an overall accuracy of 92.19%. The model was able to achieve an AUC of 0.99 for COVID-19, 0.97 for normal, and 0.97 for pneumonia. The model was able to outperform alternative models in terms of overall accuracy, sensitivity, and specificity. Conclusions: Our proposed automated diagnostic model yielded an accuracy of 94% in the initial screening of COVID-19 patients and an overall accuracy of 92.19% using chest x-ray images.
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spelling pubmed-83821392021-08-24 Detection of COVID-19 from chest x-ray images using transfer learning Manokaran, Jenita Zabihollahy, Fatemeh Hamilton-Wright, Andrew Ukwatta, Eranga J Med Imaging (Bellingham) Digital Pathology Purpose: The objective of this study is to develop and evaluate a fully automated, deep learning-based method for detection of COVID-19 infection from chest x-ray images. Approach: The proposed model was developed by replacing the final classifier layer in DenseNet201 with a new network consisting of global averaging layer, batch normalization layer, a dense layer with ReLU activation, and a final classification layer. Then, we performed an end-to-end training using the initial pretrained weights on all the layers. Our model was trained using a total of 8644 images with 4000 images each in normal and pneumonia cases and 644 in COVID-19 cases representing a large real dataset. The proposed method was evaluated based on accuracy, sensitivity, specificity, ROC curve, and [Formula: see text]-score using a test dataset comprising 1729 images (129 COVID-19, 800 normal, and 800 pneumonia). As a benchmark, we also compared the results of our method with those of seven state-of-the-art pretrained models and with a lightweight CNN architecture designed from scratch. Results: The proposed model based on DenseNet201 was able to achieve an accuracy of 94% in detecting COVID-19 and an overall accuracy of 92.19%. The model was able to achieve an AUC of 0.99 for COVID-19, 0.97 for normal, and 0.97 for pneumonia. The model was able to outperform alternative models in terms of overall accuracy, sensitivity, and specificity. Conclusions: Our proposed automated diagnostic model yielded an accuracy of 94% in the initial screening of COVID-19 patients and an overall accuracy of 92.19% using chest x-ray images. Society of Photo-Optical Instrumentation Engineers 2021-08-23 2021-01 /pmc/articles/PMC8382139/ /pubmed/34435075 http://dx.doi.org/10.1117/1.JMI.8.S1.017503 Text en © 2021 Society of Photo-Optical Instrumentation Engineers (SPIE)
spellingShingle Digital Pathology
Manokaran, Jenita
Zabihollahy, Fatemeh
Hamilton-Wright, Andrew
Ukwatta, Eranga
Detection of COVID-19 from chest x-ray images using transfer learning
title Detection of COVID-19 from chest x-ray images using transfer learning
title_full Detection of COVID-19 from chest x-ray images using transfer learning
title_fullStr Detection of COVID-19 from chest x-ray images using transfer learning
title_full_unstemmed Detection of COVID-19 from chest x-ray images using transfer learning
title_short Detection of COVID-19 from chest x-ray images using transfer learning
title_sort detection of covid-19 from chest x-ray images using transfer learning
topic Digital Pathology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8382139/
https://www.ncbi.nlm.nih.gov/pubmed/34435075
http://dx.doi.org/10.1117/1.JMI.8.S1.017503
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