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Automatic detection of COVID-19 using pruned GLCM-Based texture features and LDCRF classification
Recently, automatic computer-aided detection (CAD) of COVID-19 using radiological images has received a great deal of attention from many researchers and medical practitioners, and consequently several CAD frameworks and methods have been presented in the literature to assist the radiologist physici...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Published by Elsevier Ltd.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8382592/ https://www.ncbi.nlm.nih.gov/pubmed/34455303 http://dx.doi.org/10.1016/j.compbiomed.2021.104781 |
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author | Bakheet, Samy Al-Hamadi, Ayoub |
author_facet | Bakheet, Samy Al-Hamadi, Ayoub |
author_sort | Bakheet, Samy |
collection | PubMed |
description | Recently, automatic computer-aided detection (CAD) of COVID-19 using radiological images has received a great deal of attention from many researchers and medical practitioners, and consequently several CAD frameworks and methods have been presented in the literature to assist the radiologist physicians in performing diagnostic COVID-19 tests quickly, reliably and accurately. This paper presents an innovative framework for the automatic detection of COVID-19 from chest X-ray (CXR) images, in which a rich and effective representation of lung tissue patterns is generated from the gray level co-occurrence matrix (GLCM) based textural features. The input CXR image is first preprocessed by spatial filtering along with median filtering and contrast limited adaptive histogram equalization to improve the CXR image's poor quality and reduce image noise. Automatic thresholding by the optimized formula of Otsu's method is applied to find a proper threshold value to best segment lung regions of interest (ROIs) out from CXR images. Then, a concise set of GLCM-based texture features is extracted to accurately represent the segmented lung ROIs of each CXR image. Finally, the normalized features are fed into a trained discriminative latent-dynamic conditional random fields (LDCRFs) model for fine-grained classification to divide the cases into two categories: COVID-19 and non-COVID-19. The presented method has been experimentally tested and validated on a relatively large dataset of frontal CXR images, achieving an average accuracy, precision, recall, and F1-score of 95.88%, 96.17%, 94.45%, and 95.79%, respectively, which compare favorably with and occasionally exceed those previously reported in similar studies in the literature. |
format | Online Article Text |
id | pubmed-8382592 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Published by Elsevier Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-83825922021-08-24 Automatic detection of COVID-19 using pruned GLCM-Based texture features and LDCRF classification Bakheet, Samy Al-Hamadi, Ayoub Comput Biol Med Article Recently, automatic computer-aided detection (CAD) of COVID-19 using radiological images has received a great deal of attention from many researchers and medical practitioners, and consequently several CAD frameworks and methods have been presented in the literature to assist the radiologist physicians in performing diagnostic COVID-19 tests quickly, reliably and accurately. This paper presents an innovative framework for the automatic detection of COVID-19 from chest X-ray (CXR) images, in which a rich and effective representation of lung tissue patterns is generated from the gray level co-occurrence matrix (GLCM) based textural features. The input CXR image is first preprocessed by spatial filtering along with median filtering and contrast limited adaptive histogram equalization to improve the CXR image's poor quality and reduce image noise. Automatic thresholding by the optimized formula of Otsu's method is applied to find a proper threshold value to best segment lung regions of interest (ROIs) out from CXR images. Then, a concise set of GLCM-based texture features is extracted to accurately represent the segmented lung ROIs of each CXR image. Finally, the normalized features are fed into a trained discriminative latent-dynamic conditional random fields (LDCRFs) model for fine-grained classification to divide the cases into two categories: COVID-19 and non-COVID-19. The presented method has been experimentally tested and validated on a relatively large dataset of frontal CXR images, achieving an average accuracy, precision, recall, and F1-score of 95.88%, 96.17%, 94.45%, and 95.79%, respectively, which compare favorably with and occasionally exceed those previously reported in similar studies in the literature. Published by Elsevier Ltd. 2021-10 2021-08-24 /pmc/articles/PMC8382592/ /pubmed/34455303 http://dx.doi.org/10.1016/j.compbiomed.2021.104781 Text en © 2021 Published by Elsevier Ltd. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Bakheet, Samy Al-Hamadi, Ayoub Automatic detection of COVID-19 using pruned GLCM-Based texture features and LDCRF classification |
title | Automatic detection of COVID-19 using pruned GLCM-Based texture features and LDCRF classification |
title_full | Automatic detection of COVID-19 using pruned GLCM-Based texture features and LDCRF classification |
title_fullStr | Automatic detection of COVID-19 using pruned GLCM-Based texture features and LDCRF classification |
title_full_unstemmed | Automatic detection of COVID-19 using pruned GLCM-Based texture features and LDCRF classification |
title_short | Automatic detection of COVID-19 using pruned GLCM-Based texture features and LDCRF classification |
title_sort | automatic detection of covid-19 using pruned glcm-based texture features and ldcrf classification |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8382592/ https://www.ncbi.nlm.nih.gov/pubmed/34455303 http://dx.doi.org/10.1016/j.compbiomed.2021.104781 |
work_keys_str_mv | AT bakheetsamy automaticdetectionofcovid19usingprunedglcmbasedtexturefeaturesandldcrfclassification AT alhamadiayoub automaticdetectionofcovid19usingprunedglcmbasedtexturefeaturesandldcrfclassification |