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Balanced truncation for model reduction of biological oscillators
Model reduction is a central problem in mathematical biology. Reduced order models enable modeling of a biological system at different levels of complexity and the quantitative analysis of its properties, like sensitivity to parameter variations and resilience to exogenous perturbations. However, av...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8382660/ https://www.ncbi.nlm.nih.gov/pubmed/34382116 http://dx.doi.org/10.1007/s00422-021-00888-4 |
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author | Padoan, Alberto Forni, Fulvio Sepulchre, Rodolphe |
author_facet | Padoan, Alberto Forni, Fulvio Sepulchre, Rodolphe |
author_sort | Padoan, Alberto |
collection | PubMed |
description | Model reduction is a central problem in mathematical biology. Reduced order models enable modeling of a biological system at different levels of complexity and the quantitative analysis of its properties, like sensitivity to parameter variations and resilience to exogenous perturbations. However, available model reduction methods often fail to capture a diverse range of nonlinear behaviors observed in biology, such as multistability and limit cycle oscillations. The paper addresses this need using differential analysis. This approach leads to a nonlinear enhancement of classical balanced truncation for biological systems whose behavior is not restricted to the stability of a single equilibrium. Numerical results suggest that the proposed framework may be relevant to the approximation of classical models of biological systems. |
format | Online Article Text |
id | pubmed-8382660 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-83826602021-09-09 Balanced truncation for model reduction of biological oscillators Padoan, Alberto Forni, Fulvio Sepulchre, Rodolphe Biol Cybern Original Article Model reduction is a central problem in mathematical biology. Reduced order models enable modeling of a biological system at different levels of complexity and the quantitative analysis of its properties, like sensitivity to parameter variations and resilience to exogenous perturbations. However, available model reduction methods often fail to capture a diverse range of nonlinear behaviors observed in biology, such as multistability and limit cycle oscillations. The paper addresses this need using differential analysis. This approach leads to a nonlinear enhancement of classical balanced truncation for biological systems whose behavior is not restricted to the stability of a single equilibrium. Numerical results suggest that the proposed framework may be relevant to the approximation of classical models of biological systems. Springer Berlin Heidelberg 2021-08-12 2021 /pmc/articles/PMC8382660/ /pubmed/34382116 http://dx.doi.org/10.1007/s00422-021-00888-4 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article Padoan, Alberto Forni, Fulvio Sepulchre, Rodolphe Balanced truncation for model reduction of biological oscillators |
title | Balanced truncation for model reduction of biological oscillators |
title_full | Balanced truncation for model reduction of biological oscillators |
title_fullStr | Balanced truncation for model reduction of biological oscillators |
title_full_unstemmed | Balanced truncation for model reduction of biological oscillators |
title_short | Balanced truncation for model reduction of biological oscillators |
title_sort | balanced truncation for model reduction of biological oscillators |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8382660/ https://www.ncbi.nlm.nih.gov/pubmed/34382116 http://dx.doi.org/10.1007/s00422-021-00888-4 |
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