Cargando…
Network centrality for the identification of biomarkers in respondent-driven sampling datasets
Networks science techniques are frequently used to provide meaningful insights into the populations underlying medical and social data. This paper examines SATHCAP, a dataset related to HIV and drug use in three US cities. In particular, we use network measures such as betweenness centrality, closen...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8384166/ https://www.ncbi.nlm.nih.gov/pubmed/34428228 http://dx.doi.org/10.1371/journal.pone.0256601 |
_version_ | 1783741861460967424 |
---|---|
author | Grubb, Jacob Lopez, Derek Mohan, Bhuvaneshwar Matta, John |
author_facet | Grubb, Jacob Lopez, Derek Mohan, Bhuvaneshwar Matta, John |
author_sort | Grubb, Jacob |
collection | PubMed |
description | Networks science techniques are frequently used to provide meaningful insights into the populations underlying medical and social data. This paper examines SATHCAP, a dataset related to HIV and drug use in three US cities. In particular, we use network measures such as betweenness centrality, closeness centrality, and eigenvector centrality to find central, important nodes in a network derived from SATHCAP data. We evaluate the attributes of these important nodes and create an exceptionality score based on the number of nodes that share a particular attribute. This score, along with the underlying network itself, is used to reveal insight into the attributes of groups that can be effectively targeted to slow the spread of disease. Our research confirms a known connection between homelessness and HIV, as well as drug abuse and HIV, and shows support for the theory that individuals without easy access to transportation are more likely to be central to the spread of HIV in urban, high risk populations. |
format | Online Article Text |
id | pubmed-8384166 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-83841662021-08-25 Network centrality for the identification of biomarkers in respondent-driven sampling datasets Grubb, Jacob Lopez, Derek Mohan, Bhuvaneshwar Matta, John PLoS One Research Article Networks science techniques are frequently used to provide meaningful insights into the populations underlying medical and social data. This paper examines SATHCAP, a dataset related to HIV and drug use in three US cities. In particular, we use network measures such as betweenness centrality, closeness centrality, and eigenvector centrality to find central, important nodes in a network derived from SATHCAP data. We evaluate the attributes of these important nodes and create an exceptionality score based on the number of nodes that share a particular attribute. This score, along with the underlying network itself, is used to reveal insight into the attributes of groups that can be effectively targeted to slow the spread of disease. Our research confirms a known connection between homelessness and HIV, as well as drug abuse and HIV, and shows support for the theory that individuals without easy access to transportation are more likely to be central to the spread of HIV in urban, high risk populations. Public Library of Science 2021-08-24 /pmc/articles/PMC8384166/ /pubmed/34428228 http://dx.doi.org/10.1371/journal.pone.0256601 Text en © 2021 Grubb et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Grubb, Jacob Lopez, Derek Mohan, Bhuvaneshwar Matta, John Network centrality for the identification of biomarkers in respondent-driven sampling datasets |
title | Network centrality for the identification of biomarkers in respondent-driven sampling datasets |
title_full | Network centrality for the identification of biomarkers in respondent-driven sampling datasets |
title_fullStr | Network centrality for the identification of biomarkers in respondent-driven sampling datasets |
title_full_unstemmed | Network centrality for the identification of biomarkers in respondent-driven sampling datasets |
title_short | Network centrality for the identification of biomarkers in respondent-driven sampling datasets |
title_sort | network centrality for the identification of biomarkers in respondent-driven sampling datasets |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8384166/ https://www.ncbi.nlm.nih.gov/pubmed/34428228 http://dx.doi.org/10.1371/journal.pone.0256601 |
work_keys_str_mv | AT grubbjacob networkcentralityfortheidentificationofbiomarkersinrespondentdrivensamplingdatasets AT lopezderek networkcentralityfortheidentificationofbiomarkersinrespondentdrivensamplingdatasets AT mohanbhuvaneshwar networkcentralityfortheidentificationofbiomarkersinrespondentdrivensamplingdatasets AT mattajohn networkcentralityfortheidentificationofbiomarkersinrespondentdrivensamplingdatasets |