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Network centrality for the identification of biomarkers in respondent-driven sampling datasets

Networks science techniques are frequently used to provide meaningful insights into the populations underlying medical and social data. This paper examines SATHCAP, a dataset related to HIV and drug use in three US cities. In particular, we use network measures such as betweenness centrality, closen...

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Autores principales: Grubb, Jacob, Lopez, Derek, Mohan, Bhuvaneshwar, Matta, John
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8384166/
https://www.ncbi.nlm.nih.gov/pubmed/34428228
http://dx.doi.org/10.1371/journal.pone.0256601
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author Grubb, Jacob
Lopez, Derek
Mohan, Bhuvaneshwar
Matta, John
author_facet Grubb, Jacob
Lopez, Derek
Mohan, Bhuvaneshwar
Matta, John
author_sort Grubb, Jacob
collection PubMed
description Networks science techniques are frequently used to provide meaningful insights into the populations underlying medical and social data. This paper examines SATHCAP, a dataset related to HIV and drug use in three US cities. In particular, we use network measures such as betweenness centrality, closeness centrality, and eigenvector centrality to find central, important nodes in a network derived from SATHCAP data. We evaluate the attributes of these important nodes and create an exceptionality score based on the number of nodes that share a particular attribute. This score, along with the underlying network itself, is used to reveal insight into the attributes of groups that can be effectively targeted to slow the spread of disease. Our research confirms a known connection between homelessness and HIV, as well as drug abuse and HIV, and shows support for the theory that individuals without easy access to transportation are more likely to be central to the spread of HIV in urban, high risk populations.
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spelling pubmed-83841662021-08-25 Network centrality for the identification of biomarkers in respondent-driven sampling datasets Grubb, Jacob Lopez, Derek Mohan, Bhuvaneshwar Matta, John PLoS One Research Article Networks science techniques are frequently used to provide meaningful insights into the populations underlying medical and social data. This paper examines SATHCAP, a dataset related to HIV and drug use in three US cities. In particular, we use network measures such as betweenness centrality, closeness centrality, and eigenvector centrality to find central, important nodes in a network derived from SATHCAP data. We evaluate the attributes of these important nodes and create an exceptionality score based on the number of nodes that share a particular attribute. This score, along with the underlying network itself, is used to reveal insight into the attributes of groups that can be effectively targeted to slow the spread of disease. Our research confirms a known connection between homelessness and HIV, as well as drug abuse and HIV, and shows support for the theory that individuals without easy access to transportation are more likely to be central to the spread of HIV in urban, high risk populations. Public Library of Science 2021-08-24 /pmc/articles/PMC8384166/ /pubmed/34428228 http://dx.doi.org/10.1371/journal.pone.0256601 Text en © 2021 Grubb et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Grubb, Jacob
Lopez, Derek
Mohan, Bhuvaneshwar
Matta, John
Network centrality for the identification of biomarkers in respondent-driven sampling datasets
title Network centrality for the identification of biomarkers in respondent-driven sampling datasets
title_full Network centrality for the identification of biomarkers in respondent-driven sampling datasets
title_fullStr Network centrality for the identification of biomarkers in respondent-driven sampling datasets
title_full_unstemmed Network centrality for the identification of biomarkers in respondent-driven sampling datasets
title_short Network centrality for the identification of biomarkers in respondent-driven sampling datasets
title_sort network centrality for the identification of biomarkers in respondent-driven sampling datasets
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8384166/
https://www.ncbi.nlm.nih.gov/pubmed/34428228
http://dx.doi.org/10.1371/journal.pone.0256601
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