Cargando…

Characterization of the complete chloroplast genome of Salix linearistipularis (Franch.) Hao 1936

We characterized the complete chloroplast genome of a perennial woody plant species, Salix linearistipularis, based on high-throughput sequencing and de novo assembly technology for the first time. The complete chloroplast genome of S. linearistipularis is 155,564 bp in length, comprising one large...

Descripción completa

Detalles Bibliográficos
Autores principales: Ren, Rongrong, Li, Xiaoping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8386700/
https://www.ncbi.nlm.nih.gov/pubmed/34447893
http://dx.doi.org/10.1080/23802359.2021.1967809
_version_ 1783742305027489792
author Ren, Rongrong
Li, Xiaoping
author_facet Ren, Rongrong
Li, Xiaoping
author_sort Ren, Rongrong
collection PubMed
description We characterized the complete chloroplast genome of a perennial woody plant species, Salix linearistipularis, based on high-throughput sequencing and de novo assembly technology for the first time. The complete chloroplast genome of S. linearistipularis is 155,564 bp in length, comprising one large single-copy region (LSC, 84,460 bp), one small single-copy region (SSC, 16,182 bp), and two inverted repeat regions (IRA and IRB, 27,461 bp). The GC content of the whole chloroplast genome was 36.69%. This chloroplast genome encodes a total of 132 genes, including 86 protein-coding genes, eight ribosomal RNA genes, and 37 tRNA genes. Phylogenetic analysis reveals that S. linearistipularis is grouped with 13 other Salix species in Salicaceae.
format Online
Article
Text
id pubmed-8386700
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-83867002021-08-25 Characterization of the complete chloroplast genome of Salix linearistipularis (Franch.) Hao 1936 Ren, Rongrong Li, Xiaoping Mitochondrial DNA B Resour Mitogenome Announcement We characterized the complete chloroplast genome of a perennial woody plant species, Salix linearistipularis, based on high-throughput sequencing and de novo assembly technology for the first time. The complete chloroplast genome of S. linearistipularis is 155,564 bp in length, comprising one large single-copy region (LSC, 84,460 bp), one small single-copy region (SSC, 16,182 bp), and two inverted repeat regions (IRA and IRB, 27,461 bp). The GC content of the whole chloroplast genome was 36.69%. This chloroplast genome encodes a total of 132 genes, including 86 protein-coding genes, eight ribosomal RNA genes, and 37 tRNA genes. Phylogenetic analysis reveals that S. linearistipularis is grouped with 13 other Salix species in Salicaceae. Taylor & Francis 2021-08-24 /pmc/articles/PMC8386700/ /pubmed/34447893 http://dx.doi.org/10.1080/23802359.2021.1967809 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Ren, Rongrong
Li, Xiaoping
Characterization of the complete chloroplast genome of Salix linearistipularis (Franch.) Hao 1936
title Characterization of the complete chloroplast genome of Salix linearistipularis (Franch.) Hao 1936
title_full Characterization of the complete chloroplast genome of Salix linearistipularis (Franch.) Hao 1936
title_fullStr Characterization of the complete chloroplast genome of Salix linearistipularis (Franch.) Hao 1936
title_full_unstemmed Characterization of the complete chloroplast genome of Salix linearistipularis (Franch.) Hao 1936
title_short Characterization of the complete chloroplast genome of Salix linearistipularis (Franch.) Hao 1936
title_sort characterization of the complete chloroplast genome of salix linearistipularis (franch.) hao 1936
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8386700/
https://www.ncbi.nlm.nih.gov/pubmed/34447893
http://dx.doi.org/10.1080/23802359.2021.1967809
work_keys_str_mv AT renrongrong characterizationofthecompletechloroplastgenomeofsalixlinearistipularisfranchhao1936
AT lixiaoping characterizationofthecompletechloroplastgenomeofsalixlinearistipularisfranchhao1936