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The complete chloroplast genome sequence of Cinnamomum septentrionale (Lauraceae) from Sichuan Province, China, a medicinal plant and phylogenetic analysis
Cinnamomum septentrionale is a commercially important timber tree and wild spice plant classified in the Lauraceae. Here we sequenced the complete plastid genome of C. septentrionale to contribute to its phylogenetics and bioinformatics. The chloroplast genome of C. septentrionale is 152,729 bp in l...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8386741/ https://www.ncbi.nlm.nih.gov/pubmed/34447894 http://dx.doi.org/10.1080/23802359.2021.1967812 |
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author | Lv, Qin Liang, Bianjun Guo, Xiaojuan |
author_facet | Lv, Qin Liang, Bianjun Guo, Xiaojuan |
author_sort | Lv, Qin |
collection | PubMed |
description | Cinnamomum septentrionale is a commercially important timber tree and wild spice plant classified in the Lauraceae. Here we sequenced the complete plastid genome of C. septentrionale to contribute to its phylogenetics and bioinformatics. The chloroplast genome of C. septentrionale is 152,729 bp in length and includes a large single copy (LSC) region of 93,639 bp, a small single copy (SSC) region of 18,858 bp, and two inverted repeat (IR) regions of 20,114 bp. The GC content of LSC, SSC, IR and the whole genome is 37.9%, 33.8%, 44.4%, and 39.1%, respectively. There are 128 genes, including 84 protein-coding, 36 tRNA, and eight rRNA genes. The phylogenetic analysis resolved C. septentrionale in a sister position to C. glanduliferum. The complete chloroplast genome sequence of C. septentrionale provides valuable genomic information for future systematic studies on Cinnamomum. |
format | Online Article Text |
id | pubmed-8386741 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-83867412021-08-25 The complete chloroplast genome sequence of Cinnamomum septentrionale (Lauraceae) from Sichuan Province, China, a medicinal plant and phylogenetic analysis Lv, Qin Liang, Bianjun Guo, Xiaojuan Mitochondrial DNA B Resour Mitogenome Announcement Cinnamomum septentrionale is a commercially important timber tree and wild spice plant classified in the Lauraceae. Here we sequenced the complete plastid genome of C. septentrionale to contribute to its phylogenetics and bioinformatics. The chloroplast genome of C. septentrionale is 152,729 bp in length and includes a large single copy (LSC) region of 93,639 bp, a small single copy (SSC) region of 18,858 bp, and two inverted repeat (IR) regions of 20,114 bp. The GC content of LSC, SSC, IR and the whole genome is 37.9%, 33.8%, 44.4%, and 39.1%, respectively. There are 128 genes, including 84 protein-coding, 36 tRNA, and eight rRNA genes. The phylogenetic analysis resolved C. septentrionale in a sister position to C. glanduliferum. The complete chloroplast genome sequence of C. septentrionale provides valuable genomic information for future systematic studies on Cinnamomum. Taylor & Francis 2021-08-24 /pmc/articles/PMC8386741/ /pubmed/34447894 http://dx.doi.org/10.1080/23802359.2021.1967812 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Lv, Qin Liang, Bianjun Guo, Xiaojuan The complete chloroplast genome sequence of Cinnamomum septentrionale (Lauraceae) from Sichuan Province, China, a medicinal plant and phylogenetic analysis |
title | The complete chloroplast genome sequence of Cinnamomum septentrionale (Lauraceae) from Sichuan Province, China, a medicinal plant and phylogenetic analysis |
title_full | The complete chloroplast genome sequence of Cinnamomum septentrionale (Lauraceae) from Sichuan Province, China, a medicinal plant and phylogenetic analysis |
title_fullStr | The complete chloroplast genome sequence of Cinnamomum septentrionale (Lauraceae) from Sichuan Province, China, a medicinal plant and phylogenetic analysis |
title_full_unstemmed | The complete chloroplast genome sequence of Cinnamomum septentrionale (Lauraceae) from Sichuan Province, China, a medicinal plant and phylogenetic analysis |
title_short | The complete chloroplast genome sequence of Cinnamomum septentrionale (Lauraceae) from Sichuan Province, China, a medicinal plant and phylogenetic analysis |
title_sort | complete chloroplast genome sequence of cinnamomum septentrionale (lauraceae) from sichuan province, china, a medicinal plant and phylogenetic analysis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8386741/ https://www.ncbi.nlm.nih.gov/pubmed/34447894 http://dx.doi.org/10.1080/23802359.2021.1967812 |
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