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A data-driven methodology towards evaluating the potential of drug repurposing hypotheses

Drug repurposing has become a widely used strategy to accelerate the process of finding treatments. While classical de novo drug development involves high costs, risks, and time-consuming paths, drug repurposing allows to reuse already-existing and approved drugs for new indications. Numerous resear...

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Autores principales: Prieto Santamaría, Lucía, Ugarte Carro, Esther, Díaz Uzquiano, Marina, Menasalvas Ruiz, Ernestina, Pérez Gallardo, Yuliana, Rodríguez-González, Alejandro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8387760/
https://www.ncbi.nlm.nih.gov/pubmed/34471499
http://dx.doi.org/10.1016/j.csbj.2021.08.003
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author Prieto Santamaría, Lucía
Ugarte Carro, Esther
Díaz Uzquiano, Marina
Menasalvas Ruiz, Ernestina
Pérez Gallardo, Yuliana
Rodríguez-González, Alejandro
author_facet Prieto Santamaría, Lucía
Ugarte Carro, Esther
Díaz Uzquiano, Marina
Menasalvas Ruiz, Ernestina
Pérez Gallardo, Yuliana
Rodríguez-González, Alejandro
author_sort Prieto Santamaría, Lucía
collection PubMed
description Drug repurposing has become a widely used strategy to accelerate the process of finding treatments. While classical de novo drug development involves high costs, risks, and time-consuming paths, drug repurposing allows to reuse already-existing and approved drugs for new indications. Numerous research has been carried out in this field, both in vitro and in silico. Computational drug repurposing methods make use of modern heterogeneous biomedical data to identify and prioritize new indications for old drugs. In the current paper, we present a new complete methodology to evaluate new potentially repurposable drugs based on disease-gene and disease-phenotype associations, identifying significant differences between repurposing and non-repurposing data. We have collected a set of known successful drug repurposing case studies from the literature and we have analysed their dissimilarities with other biomedical data not necessarily participating in repurposing processes. The information used has been obtained from the DISNET platform. We have performed three analyses (at the genetical, phenotypical, and categorization levels), to conclude that there is a statistically significant difference between actual repurposing-related information and non-repurposing data. The insights obtained could be relevant when suggesting new potential drug repurposing hypotheses.
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spelling pubmed-83877602021-08-31 A data-driven methodology towards evaluating the potential of drug repurposing hypotheses Prieto Santamaría, Lucía Ugarte Carro, Esther Díaz Uzquiano, Marina Menasalvas Ruiz, Ernestina Pérez Gallardo, Yuliana Rodríguez-González, Alejandro Comput Struct Biotechnol J Research Article Drug repurposing has become a widely used strategy to accelerate the process of finding treatments. While classical de novo drug development involves high costs, risks, and time-consuming paths, drug repurposing allows to reuse already-existing and approved drugs for new indications. Numerous research has been carried out in this field, both in vitro and in silico. Computational drug repurposing methods make use of modern heterogeneous biomedical data to identify and prioritize new indications for old drugs. In the current paper, we present a new complete methodology to evaluate new potentially repurposable drugs based on disease-gene and disease-phenotype associations, identifying significant differences between repurposing and non-repurposing data. We have collected a set of known successful drug repurposing case studies from the literature and we have analysed their dissimilarities with other biomedical data not necessarily participating in repurposing processes. The information used has been obtained from the DISNET platform. We have performed three analyses (at the genetical, phenotypical, and categorization levels), to conclude that there is a statistically significant difference between actual repurposing-related information and non-repurposing data. The insights obtained could be relevant when suggesting new potential drug repurposing hypotheses. Research Network of Computational and Structural Biotechnology 2021-08-09 /pmc/articles/PMC8387760/ /pubmed/34471499 http://dx.doi.org/10.1016/j.csbj.2021.08.003 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Prieto Santamaría, Lucía
Ugarte Carro, Esther
Díaz Uzquiano, Marina
Menasalvas Ruiz, Ernestina
Pérez Gallardo, Yuliana
Rodríguez-González, Alejandro
A data-driven methodology towards evaluating the potential of drug repurposing hypotheses
title A data-driven methodology towards evaluating the potential of drug repurposing hypotheses
title_full A data-driven methodology towards evaluating the potential of drug repurposing hypotheses
title_fullStr A data-driven methodology towards evaluating the potential of drug repurposing hypotheses
title_full_unstemmed A data-driven methodology towards evaluating the potential of drug repurposing hypotheses
title_short A data-driven methodology towards evaluating the potential of drug repurposing hypotheses
title_sort data-driven methodology towards evaluating the potential of drug repurposing hypotheses
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8387760/
https://www.ncbi.nlm.nih.gov/pubmed/34471499
http://dx.doi.org/10.1016/j.csbj.2021.08.003
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