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Plant image identification application demonstrates high accuracy in Northern Europe

Automated image-based plant identification has experienced rapid development and has been already used in research and nature management. However, there is a need for extensive studies on how accurately automatic plant identification works and which characteristics of observations and study species...

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Autores principales: Pärtel, Jaak, Pärtel, Meelis, Wäldchen, Jana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8387968/
https://www.ncbi.nlm.nih.gov/pubmed/34457230
http://dx.doi.org/10.1093/aobpla/plab050
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author Pärtel, Jaak
Pärtel, Meelis
Wäldchen, Jana
author_facet Pärtel, Jaak
Pärtel, Meelis
Wäldchen, Jana
author_sort Pärtel, Jaak
collection PubMed
description Automated image-based plant identification has experienced rapid development and has been already used in research and nature management. However, there is a need for extensive studies on how accurately automatic plant identification works and which characteristics of observations and study species influence the results. We investigated the accuracy of the Flora Incognita application, a research-based tool for automated plant image identification. Our study was conducted in Estonia, Northern Europe. Photos originated from the Estonian national curated biodiversity observations database, originally without the intention to use them for automated identification (1496 photos, 542 species) were examined. Flora Incognita was also directly tested in field conditions in various habitats, taking images of plant organs as guided by the application (998 observations, 1703 photos, 280 species). Identification accuracy was compared among species characteristics: plant family, growth forms and life forms, habitat type and regional frequency. We also analysed image characteristics (plant organs, background, number of species in focus), and the number of training images that were available for particular species to develop the automated identification algorithm. From database images 79.6 % of species were correctly identified by Flora Incognita; in the field conditions species identification accuracy reached 85.3 %. Overall, the correct genus was found for 89 % and the correct plant family for 95 % of the species. Accuracy varied among different plant families, life forms and growth forms. Rare and common species and species from different habitats were identified with equal accuracy. Images with reproductive organs or with only the target species in focus were identified with greater success. The number of training images per species was positively correlated with the identification success. Even though a high accuracy has been already achieved for Flora Incognita, allowing its usage for research and practices, our results can guide further improvements of this application and automated plant identification in general.
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spelling pubmed-83879682021-08-26 Plant image identification application demonstrates high accuracy in Northern Europe Pärtel, Jaak Pärtel, Meelis Wäldchen, Jana AoB Plants Studies Automated image-based plant identification has experienced rapid development and has been already used in research and nature management. However, there is a need for extensive studies on how accurately automatic plant identification works and which characteristics of observations and study species influence the results. We investigated the accuracy of the Flora Incognita application, a research-based tool for automated plant image identification. Our study was conducted in Estonia, Northern Europe. Photos originated from the Estonian national curated biodiversity observations database, originally without the intention to use them for automated identification (1496 photos, 542 species) were examined. Flora Incognita was also directly tested in field conditions in various habitats, taking images of plant organs as guided by the application (998 observations, 1703 photos, 280 species). Identification accuracy was compared among species characteristics: plant family, growth forms and life forms, habitat type and regional frequency. We also analysed image characteristics (plant organs, background, number of species in focus), and the number of training images that were available for particular species to develop the automated identification algorithm. From database images 79.6 % of species were correctly identified by Flora Incognita; in the field conditions species identification accuracy reached 85.3 %. Overall, the correct genus was found for 89 % and the correct plant family for 95 % of the species. Accuracy varied among different plant families, life forms and growth forms. Rare and common species and species from different habitats were identified with equal accuracy. Images with reproductive organs or with only the target species in focus were identified with greater success. The number of training images per species was positively correlated with the identification success. Even though a high accuracy has been already achieved for Flora Incognita, allowing its usage for research and practices, our results can guide further improvements of this application and automated plant identification in general. Oxford University Press 2021-07-27 /pmc/articles/PMC8387968/ /pubmed/34457230 http://dx.doi.org/10.1093/aobpla/plab050 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of the Annals of Botany Company. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Studies
Pärtel, Jaak
Pärtel, Meelis
Wäldchen, Jana
Plant image identification application demonstrates high accuracy in Northern Europe
title Plant image identification application demonstrates high accuracy in Northern Europe
title_full Plant image identification application demonstrates high accuracy in Northern Europe
title_fullStr Plant image identification application demonstrates high accuracy in Northern Europe
title_full_unstemmed Plant image identification application demonstrates high accuracy in Northern Europe
title_short Plant image identification application demonstrates high accuracy in Northern Europe
title_sort plant image identification application demonstrates high accuracy in northern europe
topic Studies
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8387968/
https://www.ncbi.nlm.nih.gov/pubmed/34457230
http://dx.doi.org/10.1093/aobpla/plab050
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