Cargando…

BloodGen3Module: blood transcriptional module repertoire analysis and visualization using R

MOTIVATION: We previously described the construction and characterization of fixed reusable blood transcriptional module repertoires. More recently we released a third iteration (‘BloodGen3’ module repertoire) that comprises 382 functionally annotated modules and encompasses 14 168 transcripts. Cust...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rinchai, Darawan, Roelands, Jessica, Toufiq, Mohammed, Hendrickx, Wouter, Altman, Matthew C, Bedognetti, Davide, Chaussabel, Damien
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2021
Materias:	Original Papers
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8388021/ https://www.ncbi.nlm.nih.gov/pubmed/33624743 http://dx.doi.org/10.1093/bioinformatics/btab121

Ejemplares similares

Long-Chain Acyl-CoA Synthetase 1 Role in Sepsis and Immunity: Perspectives From a Parallel Review of Public Transcriptome Datasets and of the Literature
por: Roelands, Jessica, et al.
Publicado: (2019)

Transcriptomic profile investigations highlight a putative role for NUDT16 in sepsis
por: Huang, Susie Shih Yin, et al.
Publicado: (2022)

Increased abundance of ADAM9 transcripts in the blood is associated with tissue damage
por: Rinchai, Darawan, et al.
Publicado: (2016)

Organizing training workshops on gene literature retrieval, profiling, and visualization for early career researchers
por: Al Ali, Fatima, et al.
Publicado: (2023)

Development of a fixed module repertoire for the analysis and interpretation of blood transcriptome data
por: Altman, Matthew C., et al.
Publicado: (2021)

Finger stick blood collection for gene expression profiling and storage of tempus blood RNA tubes
por: Rinchai, Darawan, et al.
Publicado: (2017)

Annexin A3 in sepsis: novel perspectives from an exploration of public transcriptome data
por: Toufiq, Mohammed, et al.
Publicado: (2020)

A modular framework for the development of targeted Covid-19 blood transcript profiling panels
por: Rinchai, Darawan, et al.
Publicado: (2020)

Definition of erythroid cell‐positive blood transcriptome phenotypes associated with severe respiratory syncytial virus infection
por: Rinchai, Darawan, et al.
Publicado: (2020)

A Neutrophil-Driven Inflammatory Signature Characterizes the Blood Transcriptome Fingerprint of Psoriasis
por: Rawat, Arun, et al.
Publicado: (2020)

Network-based identification of key master regulators associated with an immune-silent cancer phenotype
por: Mall, Raghvendra, et al.
Publicado: (2021)

Transketolase and vitamin B1 influence on ROS-dependent neutrophil extracellular traps (NETs) formation
por: Riyapa, Donporn, et al.
Publicado: (2019)

Integrated transcriptional‐phenotypic analysis captures systemic immunomodulation following antiangiogenic therapy in renal cell carcinoma patients
por: Rinchai, Darawan, et al.
Publicado: (2021)

A curated compendium of monocyte transcriptome datasets of relevance to human monocyte immunobiology research
por: Rinchai, Darawan, et al.
Publicado: (2016)

Blood Interferon Signatures Putatively Link Lack of Protection Conferred by the RTS,S Recombinant Malaria Vaccine to an Antigen-specific IgE Response
por: Rinchai, Darawan, et al.
Publicado: (2017)

Abundance of ACVR1B transcript is elevated during septic conditions: Perspectives obtained from a hands-on reductionist investigation
por: Preechanukul, Anucha, et al.
Publicado: (2023)

A collection of annotated and harmonized human breast cancer transcriptome datasets, including immunologic classification
por: Roelands, Jessica, et al.
Publicado: (2018)

The MAPK hypothesis: immune-regulatory effects of MAPK-pathway genetic dysregulations and implications for breast cancer immunotherapy
por: Bedognetti, Davide, et al.
Publicado: (2017)

The immune landscape of solid pediatric tumors
por: Sherif, Shimaa, et al.
Publicado: (2022)

HLA-G: A New Immune Checkpoint in Cancer?
por: Krijgsman, Daniëlle, et al.
Publicado: (2020)

Harnessing large language models (LLMs) for candidate gene prioritization and selection
por: Toufiq, Mohammed, et al.
Publicado: (2023)

NY-ESO-1 Based Immunotherapy of Cancer: Current Perspectives
por: Thomas, Remy, et al.
Publicado: (2018)

Emerging dynamics pathways of response and resistance to PD-1 and CTLA-4 blockade: tackling uncertainty by confronting complexity
por: Relecom, Allan, et al.
Publicado: (2021)

A narrow repertoire of transcriptional modules responsive to pyogenic bacteria is impaired in patients carrying loss-of-function mutations in MYD88 or IRAK4
por: Alsina, L, et al.
Publicado: (2014)

A curated transcriptome dataset collection to investigate the blood transcriptional response to viral respiratory tract infection and vaccination.
por: Bougarn, Salim, et al.
Publicado: (2019)

Influence of storage conditions of small volumes of blood on immune transcriptomic profiles
por: Mathew, Rebecca, et al.
Publicado: (2020)

Oncogenic states dictate the prognostic and predictive connotations of intratumoral immune response
por: Roelands, Jessica, et al.
Publicado: (2020)

Assessing the human immune system through blood transcriptomics
por: Chaussabel, Damien, et al.
Publicado: (2010)

Immunogenomic Classification of Colorectal Cancer and Therapeutic Implications
por: Roelands, Jessica, et al.
Publicado: (2017)

Blood gene transcript signature profiling in pregnancies resulting in preterm birth: A systematic review
por: Brummaier, Tobias, et al.
Publicado: (2020)

Shared and organism-specific host responses to childhood diarrheal diseases revealed by whole blood transcript profiling
por: DeBerg, Hannah A., et al.
Publicado: (2018)

A transcriptomic reporter assay employing neutrophils to measure immunogenic activity of septic patients’ plasma
por: Khaenam, Prasong, et al.
Publicado: (2014)

Genomic transcriptional profiling identifies a candidate blood biomarker signature for the diagnosis of septicemic melioidosis
por: Pankla, Rungnapa, et al.
Publicado: (2009)

A balance score between immune stimulatory and suppressive microenvironments identifies mediators of tumour immunity and predicts pan-cancer survival
por: Turan, Tolga, et al.
Publicado: (2020)

Correction: A balance score between immune stimulatory and suppressive microenvironments identifies mediators of tumour immunity and predicts pan-cancer survival
por: Turan, Tolga, et al.
Publicado: (2020)

Immune Control of Burkholderia pseudomallei––Common, High-Frequency T-Cell Responses to a Broad Repertoire of Immunoprevalent Epitopes
por: Nithichanon, Arnone, et al.
Publicado: (2018)

A curated collection of transcriptome datasets to investigate the molecular mechanisms of immunoglobulin E-mediated atopic diseases
por: Huang, Susie S Y, et al.
Publicado: (2019)

Repertoires of Spike Avalanches Are Modulated by Behavior and Novelty
por: Ribeiro, Tiago L., et al.
Publicado: (2016)

An interactive web application for the dissemination of human systems immunology data
por: Speake, Cate, et al.
Publicado: (2015)

Transcriptome and Literature Mining Highlight the Differential Expression of ERLIN1 in Immune Cells during Sepsis
por: Huang, Susie S. Y., et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_kc9f5qa61ecrhe89j5q7g57tm4