Cargando…

RNA velocity—current challenges and future perspectives

RNA velocity has enabled the recovery of directed dynamic information from single‐cell transcriptomics by connecting measurements to the underlying kinetics of gene expression. This approach has opened up new ways of studying cellular dynamics. Here, we review the current state of RNA velocity model...

Descripción completa

Detalles Bibliográficos
Autores principales: Bergen, Volker, Soldatov, Ruslan A, Kharchenko, Peter V, Theis, Fabian J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8388041/
https://www.ncbi.nlm.nih.gov/pubmed/34435732
http://dx.doi.org/10.15252/msb.202110282
Descripción
Sumario:RNA velocity has enabled the recovery of directed dynamic information from single‐cell transcriptomics by connecting measurements to the underlying kinetics of gene expression. This approach has opened up new ways of studying cellular dynamics. Here, we review the current state of RNA velocity modeling approaches, discuss various examples illustrating limitations and potential pitfalls, and provide guidance on how the ensuing challenges may be addressed. We then outline future directions on how to generalize the concept of RNA velocity to a wider variety of biological systems and modalities.