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RNA velocity—current challenges and future perspectives
RNA velocity has enabled the recovery of directed dynamic information from single‐cell transcriptomics by connecting measurements to the underlying kinetics of gene expression. This approach has opened up new ways of studying cellular dynamics. Here, we review the current state of RNA velocity model...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8388041/ https://www.ncbi.nlm.nih.gov/pubmed/34435732 http://dx.doi.org/10.15252/msb.202110282 |
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author | Bergen, Volker Soldatov, Ruslan A Kharchenko, Peter V Theis, Fabian J |
author_facet | Bergen, Volker Soldatov, Ruslan A Kharchenko, Peter V Theis, Fabian J |
author_sort | Bergen, Volker |
collection | PubMed |
description | RNA velocity has enabled the recovery of directed dynamic information from single‐cell transcriptomics by connecting measurements to the underlying kinetics of gene expression. This approach has opened up new ways of studying cellular dynamics. Here, we review the current state of RNA velocity modeling approaches, discuss various examples illustrating limitations and potential pitfalls, and provide guidance on how the ensuing challenges may be addressed. We then outline future directions on how to generalize the concept of RNA velocity to a wider variety of biological systems and modalities. |
format | Online Article Text |
id | pubmed-8388041 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-83880412021-09-03 RNA velocity—current challenges and future perspectives Bergen, Volker Soldatov, Ruslan A Kharchenko, Peter V Theis, Fabian J Mol Syst Biol Reviews RNA velocity has enabled the recovery of directed dynamic information from single‐cell transcriptomics by connecting measurements to the underlying kinetics of gene expression. This approach has opened up new ways of studying cellular dynamics. Here, we review the current state of RNA velocity modeling approaches, discuss various examples illustrating limitations and potential pitfalls, and provide guidance on how the ensuing challenges may be addressed. We then outline future directions on how to generalize the concept of RNA velocity to a wider variety of biological systems and modalities. John Wiley and Sons Inc. 2021-08-26 /pmc/articles/PMC8388041/ /pubmed/34435732 http://dx.doi.org/10.15252/msb.202110282 Text en © 2021 The Authors. Published under the terms of the CC BY 4.0 license. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Reviews Bergen, Volker Soldatov, Ruslan A Kharchenko, Peter V Theis, Fabian J RNA velocity—current challenges and future perspectives |
title | RNA velocity—current challenges and future perspectives |
title_full | RNA velocity—current challenges and future perspectives |
title_fullStr | RNA velocity—current challenges and future perspectives |
title_full_unstemmed | RNA velocity—current challenges and future perspectives |
title_short | RNA velocity—current challenges and future perspectives |
title_sort | rna velocity—current challenges and future perspectives |
topic | Reviews |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8388041/ https://www.ncbi.nlm.nih.gov/pubmed/34435732 http://dx.doi.org/10.15252/msb.202110282 |
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