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RNA velocity—current challenges and future perspectives

RNA velocity has enabled the recovery of directed dynamic information from single‐cell transcriptomics by connecting measurements to the underlying kinetics of gene expression. This approach has opened up new ways of studying cellular dynamics. Here, we review the current state of RNA velocity model...

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Detalles Bibliográficos
Autores principales: Bergen, Volker, Soldatov, Ruslan A, Kharchenko, Peter V, Theis, Fabian J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8388041/
https://www.ncbi.nlm.nih.gov/pubmed/34435732
http://dx.doi.org/10.15252/msb.202110282
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author Bergen, Volker
Soldatov, Ruslan A
Kharchenko, Peter V
Theis, Fabian J
author_facet Bergen, Volker
Soldatov, Ruslan A
Kharchenko, Peter V
Theis, Fabian J
author_sort Bergen, Volker
collection PubMed
description RNA velocity has enabled the recovery of directed dynamic information from single‐cell transcriptomics by connecting measurements to the underlying kinetics of gene expression. This approach has opened up new ways of studying cellular dynamics. Here, we review the current state of RNA velocity modeling approaches, discuss various examples illustrating limitations and potential pitfalls, and provide guidance on how the ensuing challenges may be addressed. We then outline future directions on how to generalize the concept of RNA velocity to a wider variety of biological systems and modalities.
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spelling pubmed-83880412021-09-03 RNA velocity—current challenges and future perspectives Bergen, Volker Soldatov, Ruslan A Kharchenko, Peter V Theis, Fabian J Mol Syst Biol Reviews RNA velocity has enabled the recovery of directed dynamic information from single‐cell transcriptomics by connecting measurements to the underlying kinetics of gene expression. This approach has opened up new ways of studying cellular dynamics. Here, we review the current state of RNA velocity modeling approaches, discuss various examples illustrating limitations and potential pitfalls, and provide guidance on how the ensuing challenges may be addressed. We then outline future directions on how to generalize the concept of RNA velocity to a wider variety of biological systems and modalities. John Wiley and Sons Inc. 2021-08-26 /pmc/articles/PMC8388041/ /pubmed/34435732 http://dx.doi.org/10.15252/msb.202110282 Text en © 2021 The Authors. Published under the terms of the CC BY 4.0 license. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Reviews
Bergen, Volker
Soldatov, Ruslan A
Kharchenko, Peter V
Theis, Fabian J
RNA velocity—current challenges and future perspectives
title RNA velocity—current challenges and future perspectives
title_full RNA velocity—current challenges and future perspectives
title_fullStr RNA velocity—current challenges and future perspectives
title_full_unstemmed RNA velocity—current challenges and future perspectives
title_short RNA velocity—current challenges and future perspectives
title_sort rna velocity—current challenges and future perspectives
topic Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8388041/
https://www.ncbi.nlm.nih.gov/pubmed/34435732
http://dx.doi.org/10.15252/msb.202110282
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