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Furin and the adaptive mutation of SARS-COV2: a computational framework

SARS-2 virus has reached its most harmful mutated form and has damaged the world’s economy, integrity, health system and peace to a limit. An open problem is to address the release of antibodies after the infection and after getting the individuals vaccinated against the virus. The viral fusion proc...

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Autores principales: Sohail, Ayesha, Tunc, Sümeyye, Nutini, Alessandro, Arif, Robia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8390090/
https://www.ncbi.nlm.nih.gov/pubmed/34466655
http://dx.doi.org/10.1007/s40808-021-01260-y
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author Sohail, Ayesha
Tunc, Sümeyye
Nutini, Alessandro
Arif, Robia
author_facet Sohail, Ayesha
Tunc, Sümeyye
Nutini, Alessandro
Arif, Robia
author_sort Sohail, Ayesha
collection PubMed
description SARS-2 virus has reached its most harmful mutated form and has damaged the world’s economy, integrity, health system and peace to a limit. An open problem is to address the release of antibodies after the infection and after getting the individuals vaccinated against the virus. The viral fusion process is linked with the furin enzyme and the adaptation is linked with the mutation, called D614G mutation. The cell-protein studies are extremely challenging. We have developed a mathematical model to address the process at the cell-protein level and the delay is linked with this biological process. Genetic algorithm is used to approximate the parametric values. The mathematical model proposed during this research consists of virus concentration, the infected cells count at different stages and the effect of interferon. To improve the understanding of this model of SARS-CoV2 infection process, the action of interferon (IFN) is quantified using a variable for the non-linear mathematical model, that is based on a degradation parameter [Formula: see text] . This parameter is responsible for the delay in the dynamics of this viral action. We emphasize that this delay responds to the evasion by SARS-CoV2 via antagonizing IFN production, inhibiting IFN signaling and improving viral IFN resistance. We have provided videos to explain the modeling scheme.
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spelling pubmed-83900902021-08-27 Furin and the adaptive mutation of SARS-COV2: a computational framework Sohail, Ayesha Tunc, Sümeyye Nutini, Alessandro Arif, Robia Model Earth Syst Environ Original Article SARS-2 virus has reached its most harmful mutated form and has damaged the world’s economy, integrity, health system and peace to a limit. An open problem is to address the release of antibodies after the infection and after getting the individuals vaccinated against the virus. The viral fusion process is linked with the furin enzyme and the adaptation is linked with the mutation, called D614G mutation. The cell-protein studies are extremely challenging. We have developed a mathematical model to address the process at the cell-protein level and the delay is linked with this biological process. Genetic algorithm is used to approximate the parametric values. The mathematical model proposed during this research consists of virus concentration, the infected cells count at different stages and the effect of interferon. To improve the understanding of this model of SARS-CoV2 infection process, the action of interferon (IFN) is quantified using a variable for the non-linear mathematical model, that is based on a degradation parameter [Formula: see text] . This parameter is responsible for the delay in the dynamics of this viral action. We emphasize that this delay responds to the evasion by SARS-CoV2 via antagonizing IFN production, inhibiting IFN signaling and improving viral IFN resistance. We have provided videos to explain the modeling scheme. Springer International Publishing 2021-08-26 2022 /pmc/articles/PMC8390090/ /pubmed/34466655 http://dx.doi.org/10.1007/s40808-021-01260-y Text en © The Author(s), under exclusive licence to Springer Nature Switzerland AG 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Sohail, Ayesha
Tunc, Sümeyye
Nutini, Alessandro
Arif, Robia
Furin and the adaptive mutation of SARS-COV2: a computational framework
title Furin and the adaptive mutation of SARS-COV2: a computational framework
title_full Furin and the adaptive mutation of SARS-COV2: a computational framework
title_fullStr Furin and the adaptive mutation of SARS-COV2: a computational framework
title_full_unstemmed Furin and the adaptive mutation of SARS-COV2: a computational framework
title_short Furin and the adaptive mutation of SARS-COV2: a computational framework
title_sort furin and the adaptive mutation of sars-cov2: a computational framework
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8390090/
https://www.ncbi.nlm.nih.gov/pubmed/34466655
http://dx.doi.org/10.1007/s40808-021-01260-y
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