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Radiomics-based machine learning differentiates “ground-glass” opacities due to COVID-19 from acute non-COVID-19 lung disease

Ground-glass opacities (GGOs) are a non-specific high-resolution computed tomography (HRCT) finding tipically observed in early Coronavirus disesase 19 (COVID-19) pneumonia. However, GGOs are also seen in other acute lung diseases, thus making challenging the differential diagnosis. To this aim, we...

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Autores principales: Delli Pizzi, Andrea, Chiarelli, Antonio Maria, Chiacchiaretta, Piero, Valdesi, Cristina, Croce, Pierpaolo, Mastrodicasa, Domenico, Villani, Michela, Trebeschi, Stefano, Serafini, Francesco Lorenzo, Rosa, Consuelo, Cocco, Giulio, Luberti, Riccardo, Conte, Sabrina, Mazzamurro, Lucia, Mereu, Manuela, Patea, Rosa Lucia, Panara, Valentina, Marinari, Stefano, Vecchiet, Jacopo, Caulo, Massimo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8390673/
https://www.ncbi.nlm.nih.gov/pubmed/34446812
http://dx.doi.org/10.1038/s41598-021-96755-0
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author Delli Pizzi, Andrea
Chiarelli, Antonio Maria
Chiacchiaretta, Piero
Valdesi, Cristina
Croce, Pierpaolo
Mastrodicasa, Domenico
Villani, Michela
Trebeschi, Stefano
Serafini, Francesco Lorenzo
Rosa, Consuelo
Cocco, Giulio
Luberti, Riccardo
Conte, Sabrina
Mazzamurro, Lucia
Mereu, Manuela
Patea, Rosa Lucia
Panara, Valentina
Marinari, Stefano
Vecchiet, Jacopo
Caulo, Massimo
author_facet Delli Pizzi, Andrea
Chiarelli, Antonio Maria
Chiacchiaretta, Piero
Valdesi, Cristina
Croce, Pierpaolo
Mastrodicasa, Domenico
Villani, Michela
Trebeschi, Stefano
Serafini, Francesco Lorenzo
Rosa, Consuelo
Cocco, Giulio
Luberti, Riccardo
Conte, Sabrina
Mazzamurro, Lucia
Mereu, Manuela
Patea, Rosa Lucia
Panara, Valentina
Marinari, Stefano
Vecchiet, Jacopo
Caulo, Massimo
author_sort Delli Pizzi, Andrea
collection PubMed
description Ground-glass opacities (GGOs) are a non-specific high-resolution computed tomography (HRCT) finding tipically observed in early Coronavirus disesase 19 (COVID-19) pneumonia. However, GGOs are also seen in other acute lung diseases, thus making challenging the differential diagnosis. To this aim, we investigated the performance of a radiomics-based machine learning method to discriminate GGOs due to COVID-19 from those due to other acute lung diseases. Two sets of patients were included: a first set of 28 patients (COVID) diagnosed with COVID-19 infection confirmed by real-time polymerase chain reaction (RT-PCR) between March and April 2020 having (a) baseline HRCT at hospital admission and (b) predominant GGOs pattern on HRCT; a second set of 30 patients (nCOVID) showing (a) predominant GGOs pattern on HRCT performed between August 2019 and April 2020 and (b) availability of final diagnosis. Two readers independently segmented GGOs on HRCTs using a semi-automated approach, and radiomics features were extracted using a standard open source software (PyRadiomics). Partial least square (PLS) regression was used as the multivariate machine-learning algorithm. A leave-one-out nested cross-validation was implemented. PLS β-weights of radiomics features, including the 5% features with the largest β-weights in magnitude (top 5%), were obtained. The diagnostic performance of the radiomics model was assessed through receiver operating characteristic (ROC) analysis. The Youden’s test assessed sensitivity and specificity of the classification. A null hypothesis probability threshold of 5% was chosen (p < 0.05). The predictive model delivered an AUC of 0.868 (Youden’s index = 0.68, sensitivity = 93%, specificity 75%, p = 4.2 × 10(–7)). Of the seven features included in the top 5% features, five were texture-related. A radiomics-based machine learning signature showed the potential to accurately differentiate GGOs due to COVID-19 pneumonia from those due to other acute lung diseases. Most of the discriminant radiomics features were texture-related. This approach may assist clinician to adopt the appropriate management early, while improving the triage of patients.
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spelling pubmed-83906732021-09-01 Radiomics-based machine learning differentiates “ground-glass” opacities due to COVID-19 from acute non-COVID-19 lung disease Delli Pizzi, Andrea Chiarelli, Antonio Maria Chiacchiaretta, Piero Valdesi, Cristina Croce, Pierpaolo Mastrodicasa, Domenico Villani, Michela Trebeschi, Stefano Serafini, Francesco Lorenzo Rosa, Consuelo Cocco, Giulio Luberti, Riccardo Conte, Sabrina Mazzamurro, Lucia Mereu, Manuela Patea, Rosa Lucia Panara, Valentina Marinari, Stefano Vecchiet, Jacopo Caulo, Massimo Sci Rep Article Ground-glass opacities (GGOs) are a non-specific high-resolution computed tomography (HRCT) finding tipically observed in early Coronavirus disesase 19 (COVID-19) pneumonia. However, GGOs are also seen in other acute lung diseases, thus making challenging the differential diagnosis. To this aim, we investigated the performance of a radiomics-based machine learning method to discriminate GGOs due to COVID-19 from those due to other acute lung diseases. Two sets of patients were included: a first set of 28 patients (COVID) diagnosed with COVID-19 infection confirmed by real-time polymerase chain reaction (RT-PCR) between March and April 2020 having (a) baseline HRCT at hospital admission and (b) predominant GGOs pattern on HRCT; a second set of 30 patients (nCOVID) showing (a) predominant GGOs pattern on HRCT performed between August 2019 and April 2020 and (b) availability of final diagnosis. Two readers independently segmented GGOs on HRCTs using a semi-automated approach, and radiomics features were extracted using a standard open source software (PyRadiomics). Partial least square (PLS) regression was used as the multivariate machine-learning algorithm. A leave-one-out nested cross-validation was implemented. PLS β-weights of radiomics features, including the 5% features with the largest β-weights in magnitude (top 5%), were obtained. The diagnostic performance of the radiomics model was assessed through receiver operating characteristic (ROC) analysis. The Youden’s test assessed sensitivity and specificity of the classification. A null hypothesis probability threshold of 5% was chosen (p < 0.05). The predictive model delivered an AUC of 0.868 (Youden’s index = 0.68, sensitivity = 93%, specificity 75%, p = 4.2 × 10(–7)). Of the seven features included in the top 5% features, five were texture-related. A radiomics-based machine learning signature showed the potential to accurately differentiate GGOs due to COVID-19 pneumonia from those due to other acute lung diseases. Most of the discriminant radiomics features were texture-related. This approach may assist clinician to adopt the appropriate management early, while improving the triage of patients. Nature Publishing Group UK 2021-08-26 /pmc/articles/PMC8390673/ /pubmed/34446812 http://dx.doi.org/10.1038/s41598-021-96755-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Delli Pizzi, Andrea
Chiarelli, Antonio Maria
Chiacchiaretta, Piero
Valdesi, Cristina
Croce, Pierpaolo
Mastrodicasa, Domenico
Villani, Michela
Trebeschi, Stefano
Serafini, Francesco Lorenzo
Rosa, Consuelo
Cocco, Giulio
Luberti, Riccardo
Conte, Sabrina
Mazzamurro, Lucia
Mereu, Manuela
Patea, Rosa Lucia
Panara, Valentina
Marinari, Stefano
Vecchiet, Jacopo
Caulo, Massimo
Radiomics-based machine learning differentiates “ground-glass” opacities due to COVID-19 from acute non-COVID-19 lung disease
title Radiomics-based machine learning differentiates “ground-glass” opacities due to COVID-19 from acute non-COVID-19 lung disease
title_full Radiomics-based machine learning differentiates “ground-glass” opacities due to COVID-19 from acute non-COVID-19 lung disease
title_fullStr Radiomics-based machine learning differentiates “ground-glass” opacities due to COVID-19 from acute non-COVID-19 lung disease
title_full_unstemmed Radiomics-based machine learning differentiates “ground-glass” opacities due to COVID-19 from acute non-COVID-19 lung disease
title_short Radiomics-based machine learning differentiates “ground-glass” opacities due to COVID-19 from acute non-COVID-19 lung disease
title_sort radiomics-based machine learning differentiates “ground-glass” opacities due to covid-19 from acute non-covid-19 lung disease
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8390673/
https://www.ncbi.nlm.nih.gov/pubmed/34446812
http://dx.doi.org/10.1038/s41598-021-96755-0
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