Cargando…

Forecasting COVID-19 Severity by Intelligent Optical Fingerprinting of Blood Samples

Forecasting COVID-19 disease severity is key to supporting clinical decision making and assisting resource allocation, particularly in intensive care units (ICUs). Here, we investigated the utility of time- and frequency-related features of the backscattered signal of serum patient samples to predic...

Descripción completa

Detalles Bibliográficos
Autores principales: Faria, Simão P., Carpinteiro, Cristiana, Pinto, Vanessa, Rodrigues, Sandra M., Alves, José, Marques, Filipe, Lourenço, Marta, Santos, Paulo H., Ramos, Angélica, Cardoso, Maria J., Guimarães, João T., Rocha, Sara, Sampaio, Paula, Clifton, David A., Mumtaz, Mehak, Paiva, Joana S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8392709/
https://www.ncbi.nlm.nih.gov/pubmed/34441244
http://dx.doi.org/10.3390/diagnostics11081309
_version_ 1783743566336491520
author Faria, Simão P.
Carpinteiro, Cristiana
Pinto, Vanessa
Rodrigues, Sandra M.
Alves, José
Marques, Filipe
Lourenço, Marta
Santos, Paulo H.
Ramos, Angélica
Cardoso, Maria J.
Guimarães, João T.
Rocha, Sara
Sampaio, Paula
Clifton, David A.
Mumtaz, Mehak
Paiva, Joana S.
author_facet Faria, Simão P.
Carpinteiro, Cristiana
Pinto, Vanessa
Rodrigues, Sandra M.
Alves, José
Marques, Filipe
Lourenço, Marta
Santos, Paulo H.
Ramos, Angélica
Cardoso, Maria J.
Guimarães, João T.
Rocha, Sara
Sampaio, Paula
Clifton, David A.
Mumtaz, Mehak
Paiva, Joana S.
author_sort Faria, Simão P.
collection PubMed
description Forecasting COVID-19 disease severity is key to supporting clinical decision making and assisting resource allocation, particularly in intensive care units (ICUs). Here, we investigated the utility of time- and frequency-related features of the backscattered signal of serum patient samples to predict COVID-19 disease severity immediately after diagnosis. ICU admission was the primary outcome used to define disease severity. We developed a stacking ensemble machine learning model including the backscattered signal features (optical fingerprint), patient comorbidities, and age (AUROC = 0.80), which significantly outperformed the predictive value of clinical and laboratory variables available at hospital admission (AUROC = 0.71). The information derived from patient optical fingerprints was not strongly correlated with any clinical/laboratory variable, suggesting that optical fingerprinting brings unique information for COVID-19 severity risk assessment. Optical fingerprinting is a label-free, real-time, and low-cost technology that can be easily integrated as a front-line tool to facilitate the triage and clinical management of COVID-19 patients.
format Online
Article
Text
id pubmed-8392709
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-83927092021-08-28 Forecasting COVID-19 Severity by Intelligent Optical Fingerprinting of Blood Samples Faria, Simão P. Carpinteiro, Cristiana Pinto, Vanessa Rodrigues, Sandra M. Alves, José Marques, Filipe Lourenço, Marta Santos, Paulo H. Ramos, Angélica Cardoso, Maria J. Guimarães, João T. Rocha, Sara Sampaio, Paula Clifton, David A. Mumtaz, Mehak Paiva, Joana S. Diagnostics (Basel) Article Forecasting COVID-19 disease severity is key to supporting clinical decision making and assisting resource allocation, particularly in intensive care units (ICUs). Here, we investigated the utility of time- and frequency-related features of the backscattered signal of serum patient samples to predict COVID-19 disease severity immediately after diagnosis. ICU admission was the primary outcome used to define disease severity. We developed a stacking ensemble machine learning model including the backscattered signal features (optical fingerprint), patient comorbidities, and age (AUROC = 0.80), which significantly outperformed the predictive value of clinical and laboratory variables available at hospital admission (AUROC = 0.71). The information derived from patient optical fingerprints was not strongly correlated with any clinical/laboratory variable, suggesting that optical fingerprinting brings unique information for COVID-19 severity risk assessment. Optical fingerprinting is a label-free, real-time, and low-cost technology that can be easily integrated as a front-line tool to facilitate the triage and clinical management of COVID-19 patients. MDPI 2021-07-21 /pmc/articles/PMC8392709/ /pubmed/34441244 http://dx.doi.org/10.3390/diagnostics11081309 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Faria, Simão P.
Carpinteiro, Cristiana
Pinto, Vanessa
Rodrigues, Sandra M.
Alves, José
Marques, Filipe
Lourenço, Marta
Santos, Paulo H.
Ramos, Angélica
Cardoso, Maria J.
Guimarães, João T.
Rocha, Sara
Sampaio, Paula
Clifton, David A.
Mumtaz, Mehak
Paiva, Joana S.
Forecasting COVID-19 Severity by Intelligent Optical Fingerprinting of Blood Samples
title Forecasting COVID-19 Severity by Intelligent Optical Fingerprinting of Blood Samples
title_full Forecasting COVID-19 Severity by Intelligent Optical Fingerprinting of Blood Samples
title_fullStr Forecasting COVID-19 Severity by Intelligent Optical Fingerprinting of Blood Samples
title_full_unstemmed Forecasting COVID-19 Severity by Intelligent Optical Fingerprinting of Blood Samples
title_short Forecasting COVID-19 Severity by Intelligent Optical Fingerprinting of Blood Samples
title_sort forecasting covid-19 severity by intelligent optical fingerprinting of blood samples
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8392709/
https://www.ncbi.nlm.nih.gov/pubmed/34441244
http://dx.doi.org/10.3390/diagnostics11081309
work_keys_str_mv AT fariasimaop forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT carpinteirocristiana forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT pintovanessa forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT rodriguessandram forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT alvesjose forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT marquesfilipe forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT lourencomarta forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT santospauloh forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT ramosangelica forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT cardosomariaj forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT guimaraesjoaot forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT rochasara forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT sampaiopaula forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT cliftondavida forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT mumtazmehak forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples
AT paivajoanas forecastingcovid19severitybyintelligentopticalfingerprintingofbloodsamples