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Residual-Shuffle Network with Spatial Pyramid Pooling Module for COVID-19 Screening

Since the start of the COVID-19 pandemic at the end of 2019, more than 170 million patients have been infected with the virus that has resulted in more than 3.8 million deaths all over the world. This disease is easily spreadable from one person to another even with minimal contact, even more for th...

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Autores principales: Zulkifley, Mohd Asyraf, Abdani, Siti Raihanah, Zulkifley, Nuraisyah Hani, Shahrimin, Mohamad Ibrani
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8394651/
https://www.ncbi.nlm.nih.gov/pubmed/34441431
http://dx.doi.org/10.3390/diagnostics11081497
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author Zulkifley, Mohd Asyraf
Abdani, Siti Raihanah
Zulkifley, Nuraisyah Hani
Shahrimin, Mohamad Ibrani
author_facet Zulkifley, Mohd Asyraf
Abdani, Siti Raihanah
Zulkifley, Nuraisyah Hani
Shahrimin, Mohamad Ibrani
author_sort Zulkifley, Mohd Asyraf
collection PubMed
description Since the start of the COVID-19 pandemic at the end of 2019, more than 170 million patients have been infected with the virus that has resulted in more than 3.8 million deaths all over the world. This disease is easily spreadable from one person to another even with minimal contact, even more for the latest mutations that are more deadly than its predecessor. Hence, COVID-19 needs to be diagnosed as early as possible to minimize the risk of spreading among the community. However, the laboratory results on the approved diagnosis method by the World Health Organization, the reverse transcription-polymerase chain reaction test, takes around a day to be processed, where a longer period is observed in the developing countries. Therefore, a fast screening method that is based on existing facilities should be developed to complement this diagnosis test, so that a suspected patient can be isolated in a quarantine center. In line with this motivation, deep learning techniques were explored to provide an automated COVID-19 screening system based on X-ray imaging. This imaging modality is chosen because of its low-cost procedures that are widely available even in many small clinics. A new convolutional neural network (CNN) model is proposed instead of utilizing pre-trained networks of the existing models. The proposed network, Residual-Shuffle-Net, comprises four stacks of the residual-shuffle unit followed by a spatial pyramid pooling (SPP) unit. The architecture of the residual-shuffle unit follows an hourglass design with reduced convolution filter size in the middle layer, where a shuffle operation is performed right after the split branches have been concatenated back. Shuffle operation forces the network to learn multiple sets of features relationship across various channels instead of a set of global features. The SPP unit, which is placed at the end of the network, allows the model to learn multi-scale features that are crucial to distinguish between the COVID-19 and other types of pneumonia cases. The proposed network is benchmarked with 12 other state-of-the-art CNN models that have been designed and tuned specially for COVID-19 detection. The experimental results show that the Residual-Shuffle-Net produced the best performance in terms of accuracy and specificity metrics with 0.97390 and 0.98695, respectively. The model is also considered as a lightweight model with slightly more than 2 million parameters, which makes it suitable for mobile-based applications. For future work, an attention mechanism can be integrated to target certain regions of interest in the X-ray images that are deemed to be more informative for COVID-19 diagnosis.
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spelling pubmed-83946512021-08-28 Residual-Shuffle Network with Spatial Pyramid Pooling Module for COVID-19 Screening Zulkifley, Mohd Asyraf Abdani, Siti Raihanah Zulkifley, Nuraisyah Hani Shahrimin, Mohamad Ibrani Diagnostics (Basel) Article Since the start of the COVID-19 pandemic at the end of 2019, more than 170 million patients have been infected with the virus that has resulted in more than 3.8 million deaths all over the world. This disease is easily spreadable from one person to another even with minimal contact, even more for the latest mutations that are more deadly than its predecessor. Hence, COVID-19 needs to be diagnosed as early as possible to minimize the risk of spreading among the community. However, the laboratory results on the approved diagnosis method by the World Health Organization, the reverse transcription-polymerase chain reaction test, takes around a day to be processed, where a longer period is observed in the developing countries. Therefore, a fast screening method that is based on existing facilities should be developed to complement this diagnosis test, so that a suspected patient can be isolated in a quarantine center. In line with this motivation, deep learning techniques were explored to provide an automated COVID-19 screening system based on X-ray imaging. This imaging modality is chosen because of its low-cost procedures that are widely available even in many small clinics. A new convolutional neural network (CNN) model is proposed instead of utilizing pre-trained networks of the existing models. The proposed network, Residual-Shuffle-Net, comprises four stacks of the residual-shuffle unit followed by a spatial pyramid pooling (SPP) unit. The architecture of the residual-shuffle unit follows an hourglass design with reduced convolution filter size in the middle layer, where a shuffle operation is performed right after the split branches have been concatenated back. Shuffle operation forces the network to learn multiple sets of features relationship across various channels instead of a set of global features. The SPP unit, which is placed at the end of the network, allows the model to learn multi-scale features that are crucial to distinguish between the COVID-19 and other types of pneumonia cases. The proposed network is benchmarked with 12 other state-of-the-art CNN models that have been designed and tuned specially for COVID-19 detection. The experimental results show that the Residual-Shuffle-Net produced the best performance in terms of accuracy and specificity metrics with 0.97390 and 0.98695, respectively. The model is also considered as a lightweight model with slightly more than 2 million parameters, which makes it suitable for mobile-based applications. For future work, an attention mechanism can be integrated to target certain regions of interest in the X-ray images that are deemed to be more informative for COVID-19 diagnosis. MDPI 2021-08-19 /pmc/articles/PMC8394651/ /pubmed/34441431 http://dx.doi.org/10.3390/diagnostics11081497 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zulkifley, Mohd Asyraf
Abdani, Siti Raihanah
Zulkifley, Nuraisyah Hani
Shahrimin, Mohamad Ibrani
Residual-Shuffle Network with Spatial Pyramid Pooling Module for COVID-19 Screening
title Residual-Shuffle Network with Spatial Pyramid Pooling Module for COVID-19 Screening
title_full Residual-Shuffle Network with Spatial Pyramid Pooling Module for COVID-19 Screening
title_fullStr Residual-Shuffle Network with Spatial Pyramid Pooling Module for COVID-19 Screening
title_full_unstemmed Residual-Shuffle Network with Spatial Pyramid Pooling Module for COVID-19 Screening
title_short Residual-Shuffle Network with Spatial Pyramid Pooling Module for COVID-19 Screening
title_sort residual-shuffle network with spatial pyramid pooling module for covid-19 screening
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8394651/
https://www.ncbi.nlm.nih.gov/pubmed/34441431
http://dx.doi.org/10.3390/diagnostics11081497
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