Cargando…

Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.)

Brassinosteroids (BRs) play crucial roles in various biological processes, including plant developmental processes and response to diverse biotic and abiotic stresses. However, no information is currently available about this gene family in wheat (Triticum aestivum L.). In the present investigation,...

Descripción completa

Detalles Bibliográficos
Autores principales: Kesawat, Mahipal Singh, Kherawat, Bhagwat Singh, Singh, Anupama, Dey, Prajjal, Kabi, Mandakini, Debnath, Debanjana, Saha, Debanjana, Khandual, Ansuman, Rout, Sandeep, Manorama, Ali, Asjad, Palem, Ramasubba Reddy, Gupta, Ravi, Kadam, Avinash Ashok, Kim, Hyun-Uk, Chung, Sang-Min, Kumar, Manu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8395832/
https://www.ncbi.nlm.nih.gov/pubmed/34445448
http://dx.doi.org/10.3390/ijms22168743
_version_ 1783744260019847168
author Kesawat, Mahipal Singh
Kherawat, Bhagwat Singh
Singh, Anupama
Dey, Prajjal
Kabi, Mandakini
Debnath, Debanjana
Saha, Debanjana
Khandual, Ansuman
Rout, Sandeep
Manorama,
Ali, Asjad
Palem, Ramasubba Reddy
Gupta, Ravi
Kadam, Avinash Ashok
Kim, Hyun-Uk
Chung, Sang-Min
Kumar, Manu
author_facet Kesawat, Mahipal Singh
Kherawat, Bhagwat Singh
Singh, Anupama
Dey, Prajjal
Kabi, Mandakini
Debnath, Debanjana
Saha, Debanjana
Khandual, Ansuman
Rout, Sandeep
Manorama,
Ali, Asjad
Palem, Ramasubba Reddy
Gupta, Ravi
Kadam, Avinash Ashok
Kim, Hyun-Uk
Chung, Sang-Min
Kumar, Manu
author_sort Kesawat, Mahipal Singh
collection PubMed
description Brassinosteroids (BRs) play crucial roles in various biological processes, including plant developmental processes and response to diverse biotic and abiotic stresses. However, no information is currently available about this gene family in wheat (Triticum aestivum L.). In the present investigation, we identified the BZR gene family in wheat to understand the evolution and their role in diverse developmental processes and under different stress conditions. In this study, we performed the genome-wide analysis of the BZR gene family in the bread wheat and identified 20 TaBZR genes through a homology search and further characterized them to understand their structure, function, and distribution across various tissues. Phylogenetic analyses lead to the classification of TaBZR genes into five different groups or subfamilies, providing evidence of evolutionary relationship with Arabidopsis thaliana, Zea mays, Glycine max, and Oryza sativa. A gene exon/intron structure analysis showed a distinct evolutionary path and predicted the possible gene duplication events. Further, the physical and biochemical properties, conserved motifs, chromosomal, subcellular localization, and cis-acting regulatory elements were also examined using various computational approaches. In addition, an analysis of public RNA-seq data also shows that TaBZR genes may be involved in diverse developmental processes and stress tolerance mechanisms. Moreover, qRT-PCR results also showed similar expression with slight variation. Collectively, these results suggest that TaBZR genes might play an important role in plant developmental processes and various stress conditions. Therefore, this work provides valuable information for further elucidate the precise role of BZR family members in wheat.
format Online
Article
Text
id pubmed-8395832
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-83958322021-08-28 Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.) Kesawat, Mahipal Singh Kherawat, Bhagwat Singh Singh, Anupama Dey, Prajjal Kabi, Mandakini Debnath, Debanjana Saha, Debanjana Khandual, Ansuman Rout, Sandeep Manorama, Ali, Asjad Palem, Ramasubba Reddy Gupta, Ravi Kadam, Avinash Ashok Kim, Hyun-Uk Chung, Sang-Min Kumar, Manu Int J Mol Sci Article Brassinosteroids (BRs) play crucial roles in various biological processes, including plant developmental processes and response to diverse biotic and abiotic stresses. However, no information is currently available about this gene family in wheat (Triticum aestivum L.). In the present investigation, we identified the BZR gene family in wheat to understand the evolution and their role in diverse developmental processes and under different stress conditions. In this study, we performed the genome-wide analysis of the BZR gene family in the bread wheat and identified 20 TaBZR genes through a homology search and further characterized them to understand their structure, function, and distribution across various tissues. Phylogenetic analyses lead to the classification of TaBZR genes into five different groups or subfamilies, providing evidence of evolutionary relationship with Arabidopsis thaliana, Zea mays, Glycine max, and Oryza sativa. A gene exon/intron structure analysis showed a distinct evolutionary path and predicted the possible gene duplication events. Further, the physical and biochemical properties, conserved motifs, chromosomal, subcellular localization, and cis-acting regulatory elements were also examined using various computational approaches. In addition, an analysis of public RNA-seq data also shows that TaBZR genes may be involved in diverse developmental processes and stress tolerance mechanisms. Moreover, qRT-PCR results also showed similar expression with slight variation. Collectively, these results suggest that TaBZR genes might play an important role in plant developmental processes and various stress conditions. Therefore, this work provides valuable information for further elucidate the precise role of BZR family members in wheat. MDPI 2021-08-14 /pmc/articles/PMC8395832/ /pubmed/34445448 http://dx.doi.org/10.3390/ijms22168743 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kesawat, Mahipal Singh
Kherawat, Bhagwat Singh
Singh, Anupama
Dey, Prajjal
Kabi, Mandakini
Debnath, Debanjana
Saha, Debanjana
Khandual, Ansuman
Rout, Sandeep
Manorama,
Ali, Asjad
Palem, Ramasubba Reddy
Gupta, Ravi
Kadam, Avinash Ashok
Kim, Hyun-Uk
Chung, Sang-Min
Kumar, Manu
Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.)
title Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.)
title_full Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.)
title_fullStr Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.)
title_full_unstemmed Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.)
title_short Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.)
title_sort genome-wide identification and characterization of the brassinazole-resistant (bzr) gene family and its expression in the various developmental stage and stress conditions in wheat (triticum aestivum l.)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8395832/
https://www.ncbi.nlm.nih.gov/pubmed/34445448
http://dx.doi.org/10.3390/ijms22168743
work_keys_str_mv AT kesawatmahipalsingh genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT kherawatbhagwatsingh genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT singhanupama genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT deyprajjal genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT kabimandakini genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT debnathdebanjana genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT sahadebanjana genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT khandualansuman genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT routsandeep genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT manorama genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT aliasjad genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT palemramasubbareddy genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT guptaravi genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT kadamavinashashok genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT kimhyunuk genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT chungsangmin genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml
AT kumarmanu genomewideidentificationandcharacterizationofthebrassinazoleresistantbzrgenefamilyanditsexpressioninthevariousdevelopmentalstageandstressconditionsinwheattriticumaestivuml