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Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.)
Brassinosteroids (BRs) play crucial roles in various biological processes, including plant developmental processes and response to diverse biotic and abiotic stresses. However, no information is currently available about this gene family in wheat (Triticum aestivum L.). In the present investigation,...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8395832/ https://www.ncbi.nlm.nih.gov/pubmed/34445448 http://dx.doi.org/10.3390/ijms22168743 |
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author | Kesawat, Mahipal Singh Kherawat, Bhagwat Singh Singh, Anupama Dey, Prajjal Kabi, Mandakini Debnath, Debanjana Saha, Debanjana Khandual, Ansuman Rout, Sandeep Manorama, Ali, Asjad Palem, Ramasubba Reddy Gupta, Ravi Kadam, Avinash Ashok Kim, Hyun-Uk Chung, Sang-Min Kumar, Manu |
author_facet | Kesawat, Mahipal Singh Kherawat, Bhagwat Singh Singh, Anupama Dey, Prajjal Kabi, Mandakini Debnath, Debanjana Saha, Debanjana Khandual, Ansuman Rout, Sandeep Manorama, Ali, Asjad Palem, Ramasubba Reddy Gupta, Ravi Kadam, Avinash Ashok Kim, Hyun-Uk Chung, Sang-Min Kumar, Manu |
author_sort | Kesawat, Mahipal Singh |
collection | PubMed |
description | Brassinosteroids (BRs) play crucial roles in various biological processes, including plant developmental processes and response to diverse biotic and abiotic stresses. However, no information is currently available about this gene family in wheat (Triticum aestivum L.). In the present investigation, we identified the BZR gene family in wheat to understand the evolution and their role in diverse developmental processes and under different stress conditions. In this study, we performed the genome-wide analysis of the BZR gene family in the bread wheat and identified 20 TaBZR genes through a homology search and further characterized them to understand their structure, function, and distribution across various tissues. Phylogenetic analyses lead to the classification of TaBZR genes into five different groups or subfamilies, providing evidence of evolutionary relationship with Arabidopsis thaliana, Zea mays, Glycine max, and Oryza sativa. A gene exon/intron structure analysis showed a distinct evolutionary path and predicted the possible gene duplication events. Further, the physical and biochemical properties, conserved motifs, chromosomal, subcellular localization, and cis-acting regulatory elements were also examined using various computational approaches. In addition, an analysis of public RNA-seq data also shows that TaBZR genes may be involved in diverse developmental processes and stress tolerance mechanisms. Moreover, qRT-PCR results also showed similar expression with slight variation. Collectively, these results suggest that TaBZR genes might play an important role in plant developmental processes and various stress conditions. Therefore, this work provides valuable information for further elucidate the precise role of BZR family members in wheat. |
format | Online Article Text |
id | pubmed-8395832 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-83958322021-08-28 Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.) Kesawat, Mahipal Singh Kherawat, Bhagwat Singh Singh, Anupama Dey, Prajjal Kabi, Mandakini Debnath, Debanjana Saha, Debanjana Khandual, Ansuman Rout, Sandeep Manorama, Ali, Asjad Palem, Ramasubba Reddy Gupta, Ravi Kadam, Avinash Ashok Kim, Hyun-Uk Chung, Sang-Min Kumar, Manu Int J Mol Sci Article Brassinosteroids (BRs) play crucial roles in various biological processes, including plant developmental processes and response to diverse biotic and abiotic stresses. However, no information is currently available about this gene family in wheat (Triticum aestivum L.). In the present investigation, we identified the BZR gene family in wheat to understand the evolution and their role in diverse developmental processes and under different stress conditions. In this study, we performed the genome-wide analysis of the BZR gene family in the bread wheat and identified 20 TaBZR genes through a homology search and further characterized them to understand their structure, function, and distribution across various tissues. Phylogenetic analyses lead to the classification of TaBZR genes into five different groups or subfamilies, providing evidence of evolutionary relationship with Arabidopsis thaliana, Zea mays, Glycine max, and Oryza sativa. A gene exon/intron structure analysis showed a distinct evolutionary path and predicted the possible gene duplication events. Further, the physical and biochemical properties, conserved motifs, chromosomal, subcellular localization, and cis-acting regulatory elements were also examined using various computational approaches. In addition, an analysis of public RNA-seq data also shows that TaBZR genes may be involved in diverse developmental processes and stress tolerance mechanisms. Moreover, qRT-PCR results also showed similar expression with slight variation. Collectively, these results suggest that TaBZR genes might play an important role in plant developmental processes and various stress conditions. Therefore, this work provides valuable information for further elucidate the precise role of BZR family members in wheat. MDPI 2021-08-14 /pmc/articles/PMC8395832/ /pubmed/34445448 http://dx.doi.org/10.3390/ijms22168743 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Kesawat, Mahipal Singh Kherawat, Bhagwat Singh Singh, Anupama Dey, Prajjal Kabi, Mandakini Debnath, Debanjana Saha, Debanjana Khandual, Ansuman Rout, Sandeep Manorama, Ali, Asjad Palem, Ramasubba Reddy Gupta, Ravi Kadam, Avinash Ashok Kim, Hyun-Uk Chung, Sang-Min Kumar, Manu Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.) |
title | Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.) |
title_full | Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.) |
title_fullStr | Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.) |
title_full_unstemmed | Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.) |
title_short | Genome-Wide Identification and Characterization of the Brassinazole-resistant (BZR) Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat (Triticum aestivum L.) |
title_sort | genome-wide identification and characterization of the brassinazole-resistant (bzr) gene family and its expression in the various developmental stage and stress conditions in wheat (triticum aestivum l.) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8395832/ https://www.ncbi.nlm.nih.gov/pubmed/34445448 http://dx.doi.org/10.3390/ijms22168743 |
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