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Mutability of demographic noise in microbial range expansions
Demographic noise, the change in the composition of a population due to random birth and death events, is an important driving force in evolution because it reduces the efficacy of natural selection. Demographic noise is typically thought to be set by the population size and the environment, but rec...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8397776/ https://www.ncbi.nlm.nih.gov/pubmed/33746203 http://dx.doi.org/10.1038/s41396-021-00951-9 |
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author | Yu, QinQin Gralka, Matti Duvernoy, Marie-Cécilia Sousa, Megan Harpak, Arbel Hallatschek, Oskar |
author_facet | Yu, QinQin Gralka, Matti Duvernoy, Marie-Cécilia Sousa, Megan Harpak, Arbel Hallatschek, Oskar |
author_sort | Yu, QinQin |
collection | PubMed |
description | Demographic noise, the change in the composition of a population due to random birth and death events, is an important driving force in evolution because it reduces the efficacy of natural selection. Demographic noise is typically thought to be set by the population size and the environment, but recent experiments with microbial range expansions have revealed substantial strain-level differences in demographic noise under the same growth conditions. Many genetic and phenotypic differences exist between strains; to what extent do single mutations change the strength of demographic noise? To investigate this question, we developed a high-throughput method for measuring demographic noise in colonies without the need for genetic manipulation. By applying this method to 191 randomly-selected single gene deletion strains from the E. coli Keio collection, we find that a typical single gene deletion mutation decreases demographic noise by 8% (maximal decrease: 81%). We find that the strength of demographic noise is an emergent trait at the population level that can be predicted by colony-level traits but not cell-level traits. The observed differences in demographic noise from single gene deletions can increase the establishment probability of beneficial mutations by almost an order of magnitude (compared to in the wild type). Our results show that single mutations can substantially alter adaptation through their effects on demographic noise and suggest that demographic noise can be an evolvable trait of a population. |
format | Online Article Text |
id | pubmed-8397776 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-83977762021-09-15 Mutability of demographic noise in microbial range expansions Yu, QinQin Gralka, Matti Duvernoy, Marie-Cécilia Sousa, Megan Harpak, Arbel Hallatschek, Oskar ISME J Article Demographic noise, the change in the composition of a population due to random birth and death events, is an important driving force in evolution because it reduces the efficacy of natural selection. Demographic noise is typically thought to be set by the population size and the environment, but recent experiments with microbial range expansions have revealed substantial strain-level differences in demographic noise under the same growth conditions. Many genetic and phenotypic differences exist between strains; to what extent do single mutations change the strength of demographic noise? To investigate this question, we developed a high-throughput method for measuring demographic noise in colonies without the need for genetic manipulation. By applying this method to 191 randomly-selected single gene deletion strains from the E. coli Keio collection, we find that a typical single gene deletion mutation decreases demographic noise by 8% (maximal decrease: 81%). We find that the strength of demographic noise is an emergent trait at the population level that can be predicted by colony-level traits but not cell-level traits. The observed differences in demographic noise from single gene deletions can increase the establishment probability of beneficial mutations by almost an order of magnitude (compared to in the wild type). Our results show that single mutations can substantially alter adaptation through their effects on demographic noise and suggest that demographic noise can be an evolvable trait of a population. Nature Publishing Group UK 2021-03-21 2021-09 /pmc/articles/PMC8397776/ /pubmed/33746203 http://dx.doi.org/10.1038/s41396-021-00951-9 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Yu, QinQin Gralka, Matti Duvernoy, Marie-Cécilia Sousa, Megan Harpak, Arbel Hallatschek, Oskar Mutability of demographic noise in microbial range expansions |
title | Mutability of demographic noise in microbial range expansions |
title_full | Mutability of demographic noise in microbial range expansions |
title_fullStr | Mutability of demographic noise in microbial range expansions |
title_full_unstemmed | Mutability of demographic noise in microbial range expansions |
title_short | Mutability of demographic noise in microbial range expansions |
title_sort | mutability of demographic noise in microbial range expansions |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8397776/ https://www.ncbi.nlm.nih.gov/pubmed/33746203 http://dx.doi.org/10.1038/s41396-021-00951-9 |
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