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Incorporation of (4)J-HMBC and NOE Data into Computer-Assisted Structure Elucidation with WebCocon
Over the past decades, different software programs have been developed for the Computer-Assisted Structure Elucidation (CASE) with NMR data using with various approaches. WebCocon is one of them that has been continuously improved over the past 20 years. Here, we present the inclusion of [Formula: s...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8398166/ https://www.ncbi.nlm.nih.gov/pubmed/34443433 http://dx.doi.org/10.3390/molecules26164846 |
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author | Köck, Matthias Lindel, Thomas Junker, Jochen |
author_facet | Köck, Matthias Lindel, Thomas Junker, Jochen |
author_sort | Köck, Matthias |
collection | PubMed |
description | Over the past decades, different software programs have been developed for the Computer-Assisted Structure Elucidation (CASE) with NMR data using with various approaches. WebCocon is one of them that has been continuously improved over the past 20 years. Here, we present the inclusion of [Formula: see text] (CH) correlations ([Formula: see text]-HMBC) in the HMBC interpretation of Cocon and NOE data in WebCocon. The [Formula: see text]-HMBC data is used during the structure generation process, while the NOE data is used in post-processing of the results. The marine natural product oxocyclostylidol was selected to demonstrate WebCocon’s enhanced HMBC data processing capabilities. A systematic study of the [Formula: see text] (CH) correlations of oxocyclostylidol was performed. The application of NOEs in CASE is demonstrated using the NOE correlations of the diterpene pyrone asperginol A known from the literature. As a result, we obtained a conformation that corresponds very well to the existing X-ray structure. |
format | Online Article Text |
id | pubmed-8398166 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-83981662021-08-29 Incorporation of (4)J-HMBC and NOE Data into Computer-Assisted Structure Elucidation with WebCocon Köck, Matthias Lindel, Thomas Junker, Jochen Molecules Article Over the past decades, different software programs have been developed for the Computer-Assisted Structure Elucidation (CASE) with NMR data using with various approaches. WebCocon is one of them that has been continuously improved over the past 20 years. Here, we present the inclusion of [Formula: see text] (CH) correlations ([Formula: see text]-HMBC) in the HMBC interpretation of Cocon and NOE data in WebCocon. The [Formula: see text]-HMBC data is used during the structure generation process, while the NOE data is used in post-processing of the results. The marine natural product oxocyclostylidol was selected to demonstrate WebCocon’s enhanced HMBC data processing capabilities. A systematic study of the [Formula: see text] (CH) correlations of oxocyclostylidol was performed. The application of NOEs in CASE is demonstrated using the NOE correlations of the diterpene pyrone asperginol A known from the literature. As a result, we obtained a conformation that corresponds very well to the existing X-ray structure. MDPI 2021-08-11 /pmc/articles/PMC8398166/ /pubmed/34443433 http://dx.doi.org/10.3390/molecules26164846 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Köck, Matthias Lindel, Thomas Junker, Jochen Incorporation of (4)J-HMBC and NOE Data into Computer-Assisted Structure Elucidation with WebCocon |
title | Incorporation of (4)J-HMBC and NOE Data into Computer-Assisted Structure Elucidation with WebCocon |
title_full | Incorporation of (4)J-HMBC and NOE Data into Computer-Assisted Structure Elucidation with WebCocon |
title_fullStr | Incorporation of (4)J-HMBC and NOE Data into Computer-Assisted Structure Elucidation with WebCocon |
title_full_unstemmed | Incorporation of (4)J-HMBC and NOE Data into Computer-Assisted Structure Elucidation with WebCocon |
title_short | Incorporation of (4)J-HMBC and NOE Data into Computer-Assisted Structure Elucidation with WebCocon |
title_sort | incorporation of (4)j-hmbc and noe data into computer-assisted structure elucidation with webcocon |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8398166/ https://www.ncbi.nlm.nih.gov/pubmed/34443433 http://dx.doi.org/10.3390/molecules26164846 |
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