Comparative Genome Analysis Provides Molecular Evidence for Reclassification of the Photosynthetic Bacterium Rhodobacter sphaeroides EBL0706 as a Strain of Luteovulum azotoformans

In this study, we conducted a genome-wide comparative analysis of a former Rhodobacter sphaeroides strain EBL0706, which is now recorded as Luteovulum sphaeroides EBL0706. The genome of EBL0706 was compared with that of Luteovulum azotoformans ATCC 17025, Luteovulum azotoformans KA25, and Luteovulum...

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Autores principales: Wang, Haoyu, Sha, Xiaoling, Li, Rui, Li, Yijing, Khaleque, Himel Nahreen, Zhang, Yuxiu, Bohu, Tsing, Bai, Zhihui, Zhuang, Xuliang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8398827/
https://www.ncbi.nlm.nih.gov/pubmed/34442833
http://dx.doi.org/10.3390/microorganisms9081754
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author Wang, Haoyu
Sha, Xiaoling
Li, Rui
Li, Yijing
Khaleque, Himel Nahreen
Zhang, Yuxiu
Bohu, Tsing
Bai, Zhihui
Zhuang, Xuliang
author_facet Wang, Haoyu
Sha, Xiaoling
Li, Rui
Li, Yijing
Khaleque, Himel Nahreen
Zhang, Yuxiu
Bohu, Tsing
Bai, Zhihui
Zhuang, Xuliang
author_sort Wang, Haoyu
collection PubMed
description In this study, we conducted a genome-wide comparative analysis of a former Rhodobacter sphaeroides strain EBL0706, which is now recorded as Luteovulum sphaeroides EBL0706. The genome of EBL0706 was compared with that of Luteovulum azotoformans ATCC 17025, Luteovulum azotoformans KA25, and Luteovulum sphaeroides 2.4.1. The average nucleotide identity (ANI), tetra nucleotide signatures (Tetra), digital DNA–DNA hybridization (dDDH) values, comparative genome, and phylogenetic analysis proposed that EBL0706 is a strain of Luteovulum azotoformans. Functional annotations identified a total of 4034 protein-coding genes in the genome of EBL0706, including a complete photosynthetic gene cluster. This study provides genomic molecular verification for the strain EBL0706 to be reclassified to Luteovulum azotoformans.
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spelling pubmed-83988272021-08-29 Comparative Genome Analysis Provides Molecular Evidence for Reclassification of the Photosynthetic Bacterium Rhodobacter sphaeroides EBL0706 as a Strain of Luteovulum azotoformans Wang, Haoyu Sha, Xiaoling Li, Rui Li, Yijing Khaleque, Himel Nahreen Zhang, Yuxiu Bohu, Tsing Bai, Zhihui Zhuang, Xuliang Microorganisms Article In this study, we conducted a genome-wide comparative analysis of a former Rhodobacter sphaeroides strain EBL0706, which is now recorded as Luteovulum sphaeroides EBL0706. The genome of EBL0706 was compared with that of Luteovulum azotoformans ATCC 17025, Luteovulum azotoformans KA25, and Luteovulum sphaeroides 2.4.1. The average nucleotide identity (ANI), tetra nucleotide signatures (Tetra), digital DNA–DNA hybridization (dDDH) values, comparative genome, and phylogenetic analysis proposed that EBL0706 is a strain of Luteovulum azotoformans. Functional annotations identified a total of 4034 protein-coding genes in the genome of EBL0706, including a complete photosynthetic gene cluster. This study provides genomic molecular verification for the strain EBL0706 to be reclassified to Luteovulum azotoformans. MDPI 2021-08-17 /pmc/articles/PMC8398827/ /pubmed/34442833 http://dx.doi.org/10.3390/microorganisms9081754 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wang, Haoyu
Sha, Xiaoling
Li, Rui
Li, Yijing
Khaleque, Himel Nahreen
Zhang, Yuxiu
Bohu, Tsing
Bai, Zhihui
Zhuang, Xuliang
Comparative Genome Analysis Provides Molecular Evidence for Reclassification of the Photosynthetic Bacterium Rhodobacter sphaeroides EBL0706 as a Strain of Luteovulum azotoformans
title Comparative Genome Analysis Provides Molecular Evidence for Reclassification of the Photosynthetic Bacterium Rhodobacter sphaeroides EBL0706 as a Strain of Luteovulum azotoformans
title_full Comparative Genome Analysis Provides Molecular Evidence for Reclassification of the Photosynthetic Bacterium Rhodobacter sphaeroides EBL0706 as a Strain of Luteovulum azotoformans
title_fullStr Comparative Genome Analysis Provides Molecular Evidence for Reclassification of the Photosynthetic Bacterium Rhodobacter sphaeroides EBL0706 as a Strain of Luteovulum azotoformans
title_full_unstemmed Comparative Genome Analysis Provides Molecular Evidence for Reclassification of the Photosynthetic Bacterium Rhodobacter sphaeroides EBL0706 as a Strain of Luteovulum azotoformans
title_short Comparative Genome Analysis Provides Molecular Evidence for Reclassification of the Photosynthetic Bacterium Rhodobacter sphaeroides EBL0706 as a Strain of Luteovulum azotoformans
title_sort comparative genome analysis provides molecular evidence for reclassification of the photosynthetic bacterium rhodobacter sphaeroides ebl0706 as a strain of luteovulum azotoformans
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8398827/
https://www.ncbi.nlm.nih.gov/pubmed/34442833
http://dx.doi.org/10.3390/microorganisms9081754
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