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Modeling Red Blood Cell Viscosity Contrast Using Inner Soft Particle Suspension
The inner viscosity of a biological red blood cell is about five times larger than the viscosity of the blood plasma. In this work, we use dissipative particles to enable the proper viscosity contrast in a mesh-based red blood cell model. Each soft particle represents a coarse-grained virtual cluste...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8398941/ https://www.ncbi.nlm.nih.gov/pubmed/34442596 http://dx.doi.org/10.3390/mi12080974 |
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author | Bohiniková, Alžbeta Jančigová, Iveta Cimrák, Ivan |
author_facet | Bohiniková, Alžbeta Jančigová, Iveta Cimrák, Ivan |
author_sort | Bohiniková, Alžbeta |
collection | PubMed |
description | The inner viscosity of a biological red blood cell is about five times larger than the viscosity of the blood plasma. In this work, we use dissipative particles to enable the proper viscosity contrast in a mesh-based red blood cell model. Each soft particle represents a coarse-grained virtual cluster of hemoglobin proteins contained in the cytosol of the red blood cell. The particle interactions are governed by conservative and dissipative forces. The conservative forces have purely repulsive character, whereas the dissipative forces depend on the relative velocity between the particles. We design two computational experiments that mimic the classical viscometers. With these experiments we study the effects of particle suspension parameters on the inner cell viscosity and provide parameter sets that result in the correct viscosity contrast. The results are validated with both static and dynamic biological experiment, showing an improvement in the accuracy of the original model without major increase in computational complexity. |
format | Online Article Text |
id | pubmed-8398941 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-83989412021-08-29 Modeling Red Blood Cell Viscosity Contrast Using Inner Soft Particle Suspension Bohiniková, Alžbeta Jančigová, Iveta Cimrák, Ivan Micromachines (Basel) Article The inner viscosity of a biological red blood cell is about five times larger than the viscosity of the blood plasma. In this work, we use dissipative particles to enable the proper viscosity contrast in a mesh-based red blood cell model. Each soft particle represents a coarse-grained virtual cluster of hemoglobin proteins contained in the cytosol of the red blood cell. The particle interactions are governed by conservative and dissipative forces. The conservative forces have purely repulsive character, whereas the dissipative forces depend on the relative velocity between the particles. We design two computational experiments that mimic the classical viscometers. With these experiments we study the effects of particle suspension parameters on the inner cell viscosity and provide parameter sets that result in the correct viscosity contrast. The results are validated with both static and dynamic biological experiment, showing an improvement in the accuracy of the original model without major increase in computational complexity. MDPI 2021-08-18 /pmc/articles/PMC8398941/ /pubmed/34442596 http://dx.doi.org/10.3390/mi12080974 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Bohiniková, Alžbeta Jančigová, Iveta Cimrák, Ivan Modeling Red Blood Cell Viscosity Contrast Using Inner Soft Particle Suspension |
title | Modeling Red Blood Cell Viscosity Contrast Using Inner Soft Particle Suspension |
title_full | Modeling Red Blood Cell Viscosity Contrast Using Inner Soft Particle Suspension |
title_fullStr | Modeling Red Blood Cell Viscosity Contrast Using Inner Soft Particle Suspension |
title_full_unstemmed | Modeling Red Blood Cell Viscosity Contrast Using Inner Soft Particle Suspension |
title_short | Modeling Red Blood Cell Viscosity Contrast Using Inner Soft Particle Suspension |
title_sort | modeling red blood cell viscosity contrast using inner soft particle suspension |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8398941/ https://www.ncbi.nlm.nih.gov/pubmed/34442596 http://dx.doi.org/10.3390/mi12080974 |
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