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Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis

Meso-scale simulations have been widely used to probe aggregation caused by structural formation in macromolecular systems. However, the limitations of the long-length scale, resulting from its simulation box, cause difficulties in terms of morphological identification and insufficient classificatio...

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Autores principales: Chiangraeng, Natthiti, Armstrong, Michael, Manokruang, Kiattikhun, Lee, Vannajan Sanghiran, Jiranusornkul, Supat, Nimmanpipug, Piyarat
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8400772/
https://www.ncbi.nlm.nih.gov/pubmed/34451122
http://dx.doi.org/10.3390/polym13162581
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author Chiangraeng, Natthiti
Armstrong, Michael
Manokruang, Kiattikhun
Lee, Vannajan Sanghiran
Jiranusornkul, Supat
Nimmanpipug, Piyarat
author_facet Chiangraeng, Natthiti
Armstrong, Michael
Manokruang, Kiattikhun
Lee, Vannajan Sanghiran
Jiranusornkul, Supat
Nimmanpipug, Piyarat
author_sort Chiangraeng, Natthiti
collection PubMed
description Meso-scale simulations have been widely used to probe aggregation caused by structural formation in macromolecular systems. However, the limitations of the long-length scale, resulting from its simulation box, cause difficulties in terms of morphological identification and insufficient classification. In this study, structural knowledge derived from meso-scale simulations based on parameters from atomistic simulations were analyzed in dissipative particle dynamic (DPD) simulations of PS-b-PI diblock copolymers. The radial distribution function and its Fourier-space counterpart or structure factor were proposed using principal component analysis (PCA) as key characteristics for morphological identification and classification. Disorder, discrete clusters, hexagonally packed cylinders, connected clusters, defected lamellae, lamellae and connected cylinders were effectively grouped.
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spelling pubmed-84007722021-08-29 Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis Chiangraeng, Natthiti Armstrong, Michael Manokruang, Kiattikhun Lee, Vannajan Sanghiran Jiranusornkul, Supat Nimmanpipug, Piyarat Polymers (Basel) Article Meso-scale simulations have been widely used to probe aggregation caused by structural formation in macromolecular systems. However, the limitations of the long-length scale, resulting from its simulation box, cause difficulties in terms of morphological identification and insufficient classification. In this study, structural knowledge derived from meso-scale simulations based on parameters from atomistic simulations were analyzed in dissipative particle dynamic (DPD) simulations of PS-b-PI diblock copolymers. The radial distribution function and its Fourier-space counterpart or structure factor were proposed using principal component analysis (PCA) as key characteristics for morphological identification and classification. Disorder, discrete clusters, hexagonally packed cylinders, connected clusters, defected lamellae, lamellae and connected cylinders were effectively grouped. MDPI 2021-08-04 /pmc/articles/PMC8400772/ /pubmed/34451122 http://dx.doi.org/10.3390/polym13162581 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chiangraeng, Natthiti
Armstrong, Michael
Manokruang, Kiattikhun
Lee, Vannajan Sanghiran
Jiranusornkul, Supat
Nimmanpipug, Piyarat
Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis
title Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis
title_full Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis
title_fullStr Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis
title_full_unstemmed Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis
title_short Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis
title_sort characteristic structural knowledge for morphological identification and classification in meso-scale simulations using principal component analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8400772/
https://www.ncbi.nlm.nih.gov/pubmed/34451122
http://dx.doi.org/10.3390/polym13162581
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