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Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis
Meso-scale simulations have been widely used to probe aggregation caused by structural formation in macromolecular systems. However, the limitations of the long-length scale, resulting from its simulation box, cause difficulties in terms of morphological identification and insufficient classificatio...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8400772/ https://www.ncbi.nlm.nih.gov/pubmed/34451122 http://dx.doi.org/10.3390/polym13162581 |
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author | Chiangraeng, Natthiti Armstrong, Michael Manokruang, Kiattikhun Lee, Vannajan Sanghiran Jiranusornkul, Supat Nimmanpipug, Piyarat |
author_facet | Chiangraeng, Natthiti Armstrong, Michael Manokruang, Kiattikhun Lee, Vannajan Sanghiran Jiranusornkul, Supat Nimmanpipug, Piyarat |
author_sort | Chiangraeng, Natthiti |
collection | PubMed |
description | Meso-scale simulations have been widely used to probe aggregation caused by structural formation in macromolecular systems. However, the limitations of the long-length scale, resulting from its simulation box, cause difficulties in terms of morphological identification and insufficient classification. In this study, structural knowledge derived from meso-scale simulations based on parameters from atomistic simulations were analyzed in dissipative particle dynamic (DPD) simulations of PS-b-PI diblock copolymers. The radial distribution function and its Fourier-space counterpart or structure factor were proposed using principal component analysis (PCA) as key characteristics for morphological identification and classification. Disorder, discrete clusters, hexagonally packed cylinders, connected clusters, defected lamellae, lamellae and connected cylinders were effectively grouped. |
format | Online Article Text |
id | pubmed-8400772 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-84007722021-08-29 Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis Chiangraeng, Natthiti Armstrong, Michael Manokruang, Kiattikhun Lee, Vannajan Sanghiran Jiranusornkul, Supat Nimmanpipug, Piyarat Polymers (Basel) Article Meso-scale simulations have been widely used to probe aggregation caused by structural formation in macromolecular systems. However, the limitations of the long-length scale, resulting from its simulation box, cause difficulties in terms of morphological identification and insufficient classification. In this study, structural knowledge derived from meso-scale simulations based on parameters from atomistic simulations were analyzed in dissipative particle dynamic (DPD) simulations of PS-b-PI diblock copolymers. The radial distribution function and its Fourier-space counterpart or structure factor were proposed using principal component analysis (PCA) as key characteristics for morphological identification and classification. Disorder, discrete clusters, hexagonally packed cylinders, connected clusters, defected lamellae, lamellae and connected cylinders were effectively grouped. MDPI 2021-08-04 /pmc/articles/PMC8400772/ /pubmed/34451122 http://dx.doi.org/10.3390/polym13162581 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Chiangraeng, Natthiti Armstrong, Michael Manokruang, Kiattikhun Lee, Vannajan Sanghiran Jiranusornkul, Supat Nimmanpipug, Piyarat Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis |
title | Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis |
title_full | Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis |
title_fullStr | Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis |
title_full_unstemmed | Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis |
title_short | Characteristic Structural Knowledge for Morphological Identification and Classification in Meso-Scale Simulations Using Principal Component Analysis |
title_sort | characteristic structural knowledge for morphological identification and classification in meso-scale simulations using principal component analysis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8400772/ https://www.ncbi.nlm.nih.gov/pubmed/34451122 http://dx.doi.org/10.3390/polym13162581 |
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