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Transfer Learning Approach for Classification of Histopathology Whole Slide Images
The classification of whole slide images (WSIs) provides physicians with an accurate analysis of diseases and also helps them to treat patients effectively. The classification can be linked to further detailed analysis and diagnosis. Deep learning (DL) has made significant advances in the medical in...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8401188/ https://www.ncbi.nlm.nih.gov/pubmed/34450802 http://dx.doi.org/10.3390/s21165361 |
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author | Ahmed, Shakil Shaikh, Asadullah Alshahrani, Hani Alghamdi, Abdullah Alrizq, Mesfer Baber, Junaid Bakhtyar, Maheen |
author_facet | Ahmed, Shakil Shaikh, Asadullah Alshahrani, Hani Alghamdi, Abdullah Alrizq, Mesfer Baber, Junaid Bakhtyar, Maheen |
author_sort | Ahmed, Shakil |
collection | PubMed |
description | The classification of whole slide images (WSIs) provides physicians with an accurate analysis of diseases and also helps them to treat patients effectively. The classification can be linked to further detailed analysis and diagnosis. Deep learning (DL) has made significant advances in the medical industry, including the use of magnetic resonance imaging (MRI) scans, computerized tomography (CT) scans, and electrocardiograms (ECGs) to detect life-threatening diseases, including heart disease, cancer, and brain tumors. However, more advancement in the field of pathology is needed, but the main hurdle causing the slow progress is the shortage of large-labeled datasets of histopathology images to train the models. The Kimia Path24 dataset was particularly created for the classification and retrieval of histopathology images. It contains 23,916 histopathology patches with 24 tissue texture classes. A transfer learning-based framework is proposed and evaluated on two famous DL models, Inception-V3 and VGG-16. To improve the productivity of Inception-V3 and VGG-16, we used their pre-trained weights and concatenated these with an image vector, which is used as input for the training of the same architecture. Experiments show that the proposed innovation improves the accuracy of both famous models. The patch-to-scan accuracy of VGG-16 is improved from 0.65 to 0.77, and for the Inception-V3, it is improved from 0.74 to 0.79. |
format | Online Article Text |
id | pubmed-8401188 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-84011882021-08-29 Transfer Learning Approach for Classification of Histopathology Whole Slide Images Ahmed, Shakil Shaikh, Asadullah Alshahrani, Hani Alghamdi, Abdullah Alrizq, Mesfer Baber, Junaid Bakhtyar, Maheen Sensors (Basel) Article The classification of whole slide images (WSIs) provides physicians with an accurate analysis of diseases and also helps them to treat patients effectively. The classification can be linked to further detailed analysis and diagnosis. Deep learning (DL) has made significant advances in the medical industry, including the use of magnetic resonance imaging (MRI) scans, computerized tomography (CT) scans, and electrocardiograms (ECGs) to detect life-threatening diseases, including heart disease, cancer, and brain tumors. However, more advancement in the field of pathology is needed, but the main hurdle causing the slow progress is the shortage of large-labeled datasets of histopathology images to train the models. The Kimia Path24 dataset was particularly created for the classification and retrieval of histopathology images. It contains 23,916 histopathology patches with 24 tissue texture classes. A transfer learning-based framework is proposed and evaluated on two famous DL models, Inception-V3 and VGG-16. To improve the productivity of Inception-V3 and VGG-16, we used their pre-trained weights and concatenated these with an image vector, which is used as input for the training of the same architecture. Experiments show that the proposed innovation improves the accuracy of both famous models. The patch-to-scan accuracy of VGG-16 is improved from 0.65 to 0.77, and for the Inception-V3, it is improved from 0.74 to 0.79. MDPI 2021-08-09 /pmc/articles/PMC8401188/ /pubmed/34450802 http://dx.doi.org/10.3390/s21165361 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Ahmed, Shakil Shaikh, Asadullah Alshahrani, Hani Alghamdi, Abdullah Alrizq, Mesfer Baber, Junaid Bakhtyar, Maheen Transfer Learning Approach for Classification of Histopathology Whole Slide Images |
title | Transfer Learning Approach for Classification of Histopathology Whole Slide Images |
title_full | Transfer Learning Approach for Classification of Histopathology Whole Slide Images |
title_fullStr | Transfer Learning Approach for Classification of Histopathology Whole Slide Images |
title_full_unstemmed | Transfer Learning Approach for Classification of Histopathology Whole Slide Images |
title_short | Transfer Learning Approach for Classification of Histopathology Whole Slide Images |
title_sort | transfer learning approach for classification of histopathology whole slide images |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8401188/ https://www.ncbi.nlm.nih.gov/pubmed/34450802 http://dx.doi.org/10.3390/s21165361 |
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