Cargando…

Transfer Learning Approach for Classification of Histopathology Whole Slide Images

The classification of whole slide images (WSIs) provides physicians with an accurate analysis of diseases and also helps them to treat patients effectively. The classification can be linked to further detailed analysis and diagnosis. Deep learning (DL) has made significant advances in the medical in...

Descripción completa

Detalles Bibliográficos
Autores principales: Ahmed, Shakil, Shaikh, Asadullah, Alshahrani, Hani, Alghamdi, Abdullah, Alrizq, Mesfer, Baber, Junaid, Bakhtyar, Maheen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8401188/
https://www.ncbi.nlm.nih.gov/pubmed/34450802
http://dx.doi.org/10.3390/s21165361
_version_ 1783745492423802880
author Ahmed, Shakil
Shaikh, Asadullah
Alshahrani, Hani
Alghamdi, Abdullah
Alrizq, Mesfer
Baber, Junaid
Bakhtyar, Maheen
author_facet Ahmed, Shakil
Shaikh, Asadullah
Alshahrani, Hani
Alghamdi, Abdullah
Alrizq, Mesfer
Baber, Junaid
Bakhtyar, Maheen
author_sort Ahmed, Shakil
collection PubMed
description The classification of whole slide images (WSIs) provides physicians with an accurate analysis of diseases and also helps them to treat patients effectively. The classification can be linked to further detailed analysis and diagnosis. Deep learning (DL) has made significant advances in the medical industry, including the use of magnetic resonance imaging (MRI) scans, computerized tomography (CT) scans, and electrocardiograms (ECGs) to detect life-threatening diseases, including heart disease, cancer, and brain tumors. However, more advancement in the field of pathology is needed, but the main hurdle causing the slow progress is the shortage of large-labeled datasets of histopathology images to train the models. The Kimia Path24 dataset was particularly created for the classification and retrieval of histopathology images. It contains 23,916 histopathology patches with 24 tissue texture classes. A transfer learning-based framework is proposed and evaluated on two famous DL models, Inception-V3 and VGG-16. To improve the productivity of Inception-V3 and VGG-16, we used their pre-trained weights and concatenated these with an image vector, which is used as input for the training of the same architecture. Experiments show that the proposed innovation improves the accuracy of both famous models. The patch-to-scan accuracy of VGG-16 is improved from 0.65 to 0.77, and for the Inception-V3, it is improved from 0.74 to 0.79.
format Online
Article
Text
id pubmed-8401188
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-84011882021-08-29 Transfer Learning Approach for Classification of Histopathology Whole Slide Images Ahmed, Shakil Shaikh, Asadullah Alshahrani, Hani Alghamdi, Abdullah Alrizq, Mesfer Baber, Junaid Bakhtyar, Maheen Sensors (Basel) Article The classification of whole slide images (WSIs) provides physicians with an accurate analysis of diseases and also helps them to treat patients effectively. The classification can be linked to further detailed analysis and diagnosis. Deep learning (DL) has made significant advances in the medical industry, including the use of magnetic resonance imaging (MRI) scans, computerized tomography (CT) scans, and electrocardiograms (ECGs) to detect life-threatening diseases, including heart disease, cancer, and brain tumors. However, more advancement in the field of pathology is needed, but the main hurdle causing the slow progress is the shortage of large-labeled datasets of histopathology images to train the models. The Kimia Path24 dataset was particularly created for the classification and retrieval of histopathology images. It contains 23,916 histopathology patches with 24 tissue texture classes. A transfer learning-based framework is proposed and evaluated on two famous DL models, Inception-V3 and VGG-16. To improve the productivity of Inception-V3 and VGG-16, we used their pre-trained weights and concatenated these with an image vector, which is used as input for the training of the same architecture. Experiments show that the proposed innovation improves the accuracy of both famous models. The patch-to-scan accuracy of VGG-16 is improved from 0.65 to 0.77, and for the Inception-V3, it is improved from 0.74 to 0.79. MDPI 2021-08-09 /pmc/articles/PMC8401188/ /pubmed/34450802 http://dx.doi.org/10.3390/s21165361 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ahmed, Shakil
Shaikh, Asadullah
Alshahrani, Hani
Alghamdi, Abdullah
Alrizq, Mesfer
Baber, Junaid
Bakhtyar, Maheen
Transfer Learning Approach for Classification of Histopathology Whole Slide Images
title Transfer Learning Approach for Classification of Histopathology Whole Slide Images
title_full Transfer Learning Approach for Classification of Histopathology Whole Slide Images
title_fullStr Transfer Learning Approach for Classification of Histopathology Whole Slide Images
title_full_unstemmed Transfer Learning Approach for Classification of Histopathology Whole Slide Images
title_short Transfer Learning Approach for Classification of Histopathology Whole Slide Images
title_sort transfer learning approach for classification of histopathology whole slide images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8401188/
https://www.ncbi.nlm.nih.gov/pubmed/34450802
http://dx.doi.org/10.3390/s21165361
work_keys_str_mv AT ahmedshakil transferlearningapproachforclassificationofhistopathologywholeslideimages
AT shaikhasadullah transferlearningapproachforclassificationofhistopathologywholeslideimages
AT alshahranihani transferlearningapproachforclassificationofhistopathologywholeslideimages
AT alghamdiabdullah transferlearningapproachforclassificationofhistopathologywholeslideimages
AT alrizqmesfer transferlearningapproachforclassificationofhistopathologywholeslideimages
AT baberjunaid transferlearningapproachforclassificationofhistopathologywholeslideimages
AT bakhtyarmaheen transferlearningapproachforclassificationofhistopathologywholeslideimages