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Pulmonary COVID-19: Learning Spatiotemporal Features Combining CNN and LSTM Networks for Lung Ultrasound Video Classification

Deep Learning is a very active and important area for building Computer-Aided Diagnosis (CAD) applications. This work aims to present a hybrid model to classify lung ultrasound (LUS) videos captured by convex transducers to diagnose COVID-19. A Convolutional Neural Network (CNN) performed the extrac...

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Detalles Bibliográficos
Autores principales: Barros, Bruno, Lacerda, Paulo, Albuquerque, Célio, Conci, Aura
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8401701/
https://www.ncbi.nlm.nih.gov/pubmed/34450928
http://dx.doi.org/10.3390/s21165486
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author Barros, Bruno
Lacerda, Paulo
Albuquerque, Célio
Conci, Aura
author_facet Barros, Bruno
Lacerda, Paulo
Albuquerque, Célio
Conci, Aura
author_sort Barros, Bruno
collection PubMed
description Deep Learning is a very active and important area for building Computer-Aided Diagnosis (CAD) applications. This work aims to present a hybrid model to classify lung ultrasound (LUS) videos captured by convex transducers to diagnose COVID-19. A Convolutional Neural Network (CNN) performed the extraction of spatial features, and the temporal dependence was learned using a Long Short-Term Memory (LSTM). Different types of convolutional architectures were used for feature extraction. The hybrid model (CNN-LSTM) hyperparameters were optimized using the Optuna framework. The best hybrid model was composed of an Xception pre-trained on ImageNet and an LSTM containing 512 units, configured with a dropout rate of 0.4, two fully connected layers containing 1024 neurons each, and a sequence of 20 frames in the input layer [Formula: see text]. The model presented an average accuracy of 93% and sensitivity of 97% for COVID-19, outperforming models based purely on spatial approaches. Furthermore, feature extraction using transfer learning with models pre-trained on ImageNet provided comparable results to models pre-trained on LUS images. The results corroborate with other studies showing that this model for LUS classification can be an important tool in the fight against COVID-19 and other lung diseases.
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spelling pubmed-84017012021-08-29 Pulmonary COVID-19: Learning Spatiotemporal Features Combining CNN and LSTM Networks for Lung Ultrasound Video Classification Barros, Bruno Lacerda, Paulo Albuquerque, Célio Conci, Aura Sensors (Basel) Article Deep Learning is a very active and important area for building Computer-Aided Diagnosis (CAD) applications. This work aims to present a hybrid model to classify lung ultrasound (LUS) videos captured by convex transducers to diagnose COVID-19. A Convolutional Neural Network (CNN) performed the extraction of spatial features, and the temporal dependence was learned using a Long Short-Term Memory (LSTM). Different types of convolutional architectures were used for feature extraction. The hybrid model (CNN-LSTM) hyperparameters were optimized using the Optuna framework. The best hybrid model was composed of an Xception pre-trained on ImageNet and an LSTM containing 512 units, configured with a dropout rate of 0.4, two fully connected layers containing 1024 neurons each, and a sequence of 20 frames in the input layer [Formula: see text]. The model presented an average accuracy of 93% and sensitivity of 97% for COVID-19, outperforming models based purely on spatial approaches. Furthermore, feature extraction using transfer learning with models pre-trained on ImageNet provided comparable results to models pre-trained on LUS images. The results corroborate with other studies showing that this model for LUS classification can be an important tool in the fight against COVID-19 and other lung diseases. MDPI 2021-08-14 /pmc/articles/PMC8401701/ /pubmed/34450928 http://dx.doi.org/10.3390/s21165486 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Barros, Bruno
Lacerda, Paulo
Albuquerque, Célio
Conci, Aura
Pulmonary COVID-19: Learning Spatiotemporal Features Combining CNN and LSTM Networks for Lung Ultrasound Video Classification
title Pulmonary COVID-19: Learning Spatiotemporal Features Combining CNN and LSTM Networks for Lung Ultrasound Video Classification
title_full Pulmonary COVID-19: Learning Spatiotemporal Features Combining CNN and LSTM Networks for Lung Ultrasound Video Classification
title_fullStr Pulmonary COVID-19: Learning Spatiotemporal Features Combining CNN and LSTM Networks for Lung Ultrasound Video Classification
title_full_unstemmed Pulmonary COVID-19: Learning Spatiotemporal Features Combining CNN and LSTM Networks for Lung Ultrasound Video Classification
title_short Pulmonary COVID-19: Learning Spatiotemporal Features Combining CNN and LSTM Networks for Lung Ultrasound Video Classification
title_sort pulmonary covid-19: learning spatiotemporal features combining cnn and lstm networks for lung ultrasound video classification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8401701/
https://www.ncbi.nlm.nih.gov/pubmed/34450928
http://dx.doi.org/10.3390/s21165486
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