Cargando…

Identifying transcript 5′ capped ends in Plasmodium falciparum

BACKGROUND: The genome of the human malaria parasite Plasmodium falciparum is poorly annotated, in particular, the 5′ capped ends of its mRNA transcripts. New approaches are needed to fully catalog P. falciparum transcripts for understanding gene function and regulation in this organism. METHODS: We...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shaw, Philip J., Piriyapongsa, Jittima, Kaewprommal, Pavita, Wongsombat, Chayaphat, Chaosrikul, Chadapohn, Teeravajanadet, Krirkwit, Boonbangyang, Manon, Uthaipibull, Chairat, Kamchonwongpaisan, Sumalee, Tongsima, Sissades
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	PeerJ Inc. 2021
Materias:	Bioinformatics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8401752/ https://www.ncbi.nlm.nih.gov/pubmed/34527439 http://dx.doi.org/10.7717/peerj.11983

Ejemplares similares

Transcriptomic complexity of the human malaria parasite Plasmodium falciparum revealed by long-read sequencing
por: Shaw, Philip J., et al.
Publicado: (2022)

Plasmodium parasites mount an arrest response to dihydroartemisinin, as revealed by whole transcriptome shotgun sequencing (RNA-seq) and microarray study
por: Shaw, Philip J., et al.
Publicado: (2015)

The Plasmodium berghei RC strain is highly diverged and harbors putatively novel drug resistance variants
por: Songsungthong, Warangkhana, et al.
Publicado: (2017)

Monitoring drug resistance in Plasmodium falciparum clinical isolates collected from Northern Thailand
por: Uthaipibull, Chairat, et al.
Publicado: (2014)

PharmVIP: A Web-Based Tool for Pharmacogenomic Variant Analysis and Interpretation
por: Piriyapongsa, Jittima, et al.
Publicado: (2021)

Inducible Knockdown of Plasmodium Gene Expression Using the glmS Ribozyme
por: Prommana, Parichat, et al.
Publicado: (2013)

ToNER: A tool for identifying nucleotide enrichment signals in feature-enriched RNA-seq data
por: Promworn, Yuttachon, et al.
Publicado: (2017)

Comparison of gene expression profiles between human erythroid cells derived from fetal liver and adult peripheral blood
por: Tangprasittipap, Amornrat, et al.
Publicado: (2018)

Global gene expression profiling of Plasmodium falciparum in response to the anti-malarial drug pyronaridine
por: Kritsiriwuthinan, Kanyanan, et al.
Publicado: (2011)

Selection of drug resistant mutants from random library of Plasmodium falciparum dihydrofolate reductase in Plasmodium berghei model
por: Tipsuwan, Wachiraporn, et al.
Publicado: (2011)

Inhibitory effect of novel iron chelator, 1-(N-acetyl-6-aminohexyl)-3-hydroxy-2-methylpyridin-4-one (CM1) and green tea extract on growth of Plasmodium falciparum
por: Thipubon, Phitsinee, et al.
Publicado: (2015)

Validation of Plasmodium falciparum deoxyhypusine synthase as an antimalarial target
por: Aroonsri, Aiyada, et al.
Publicado: (2019)

Genome-wide functional screening of drug-resistance genes in Plasmodium falciparum
por: Iwanaga, Shiroh, et al.
Publicado: (2022)

Transgenic Plasmodium parasites stably expressing Plasmodium vivax dihydrofolate reductase-thymidylate synthase as in vitro and in vivo models for antifolate screening
por: Somsak, Voravuth, et al.
Publicado: (2011)

Antagonistic antimalarial properties of a methoxyamino chalcone derivative and 3-hydroxypyridinones in combination with dihydroartemisinin against Plasmodium falciparum
por: Kampoun, Tanyaluck, et al.
Publicado: (2023)

microPIR: An Integrated Database of MicroRNA Target Sites within Human Promoter Sequences
por: Piriyapongsa, Jittima, et al.
Publicado: (2012)

microPIR2: a comprehensive database for human–mouse comparative study of microRNA–promoter interactions
por: Piriyapongsa, Jittima, et al.
Publicado: (2014)

Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing
por: Piriyapongsa, Jittima, et al.
Publicado: (2018)

Evolutionary and epidemiological analyses based on spike genes of porcine epidemic diarrhea virus circulating in Thailand in 2008–2015
por: Stott, Christopher J., et al.
Publicado: (2017)

Full-length genome analysis of two genetically distinct variants of porcine epidemic diarrhea virus in Thailand
por: Cheun-Arom, Thaniwan, et al.
Publicado: (2016)

An automatic device for detection and classification of malaria parasite species in thick blood film
por: Kaewkamnerd, Saowaluck, et al.
Publicado: (2012)

Hypomethylation of Intragenic LINE-1 Represses Transcription in Cancer Cells through AGO2
por: Aporntewan, Chatchawit, et al.
Publicado: (2011)

A nuclear targeting system in Plasmodium falciparum
por: Wittayacom, Kanjana, et al.
Publicado: (2010)

The relationship between protein domains and homopeptides in the Plasmodium falciparum proteome
por: Wang, Yue, et al.
Publicado: (2020)

Investigation of an Allosteric Deoxyhypusine Synthase Inhibitor in P. falciparum
por: Aroonsri, Aiyada, et al.
Publicado: (2022)

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation
por: Piriyapongsa, Jittima, et al.
Publicado: (2009)

Discovery of new non-pyrimidine scaffolds as Plasmodium falciparum DHFR inhibitors by fragment-based screening
por: Hoarau, Marie, et al.
Publicado: (2021)

Study of large and highly stratified population datasets by combining iterative pruning principal component analysis and structure
por: Limpiti, Tulaya, et al.
Publicado: (2011)

Iterative pruning PCA improves resolution of highly structured populations
por: Intarapanich, Apichart, et al.
Publicado: (2009)

iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies
por: Piriyapongsa, Jittima, et al.
Publicado: (2012)

Genetic signatures of Mycobacterium tuberculosis Nonthaburi genotype revealed by whole genome analysis of isolates from tuberculous meningitis patients in Thailand
por: Coker, Olabisi Oluwabukola, et al.
Publicado: (2016)

Hybrid Inhibitors of Malarial Dihydrofolate Reductase with Dual Binding Modes That Can Forestall Resistance
por: Tarnchompoo, Bongkoch, et al.
Publicado: (2018)

Deletion of Plasmodium falciparum ubc13 increases parasite sensitivity to the mutagen, methyl methanesulfonate and dihydroartemisinin
por: Maneekesorn, Supawadee, et al.
Publicado: (2021)

Inhibitory effect of novel iron chelator, 1-(N-acetyl-6-aminohexyl)-3-hydroxy-2-methylpyridin-4-one (CM1) and green tea extract on growth of Plasmodium falciparum
por: Srichairatanakool, Somdet, et al.
Publicado: (2014)

A Genetically Hard-Wired Metabolic Transcriptome in Plasmodium falciparum Fails to Mount Protective Responses to Lethal Antifolates
por: Ganesan, Karthikeyan, et al.
Publicado: (2008)

Assay Development and Identification of the First Plasmodium falciparum 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase Inhibitors
por: Hoarau, Marie, et al.
Publicado: (2022)

Apicoplast ribosomal protein S10-V127M enhances artemisinin resistance of a Kelch13 transgenic Plasmodium falciparum
por: Kampoun, Tanyaluck, et al.
Publicado: (2022)

Plasmodium serine hydroxymethyltransferase: indispensability and display of distinct localization
por: Pornthanakasem, Wichai, et al.
Publicado: (2012)

Structure-based computational screening of 470 natural quercetin derivatives for identification of SARS-CoV-2 M(pro) inhibitor
por: Kakhar Umar, Abd., et al.
Publicado: (2023)

ScreenCap3: Improving prediction of caspase-3 cleavage sites using experimentally verified noncleavage sites
por: Fu, Szu-Chin, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_6bnq9kqh5gap6n0mbl3ku8mb6p