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Poor data stewardship will hinder global genetic diversity surveillance

Genomic data are being produced and archived at a prodigious rate, and current studies could become historical baselines for future global genetic diversity analyses and monitoring programs. However, when we evaluated the potential utility of genomic data from wild and domesticated eukaryote species...

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Autores principales: Toczydlowski, Rachel H., Liggins, Libby, Gaither, Michelle R., Anderson, Tanner J., Barton, Randi L., Berg, Justin T., Beskid, Sofia G., Davis, Beth, Delgado, Alonso, Farrell, Emily, Ghoojaei, Maryam, Himmelsbach, Nan, Holmes, Ann E., Queeno, Samantha R., Trinh, Thienthanh, Weyand, Courtney A., Bradburd, Gideon S., Riginos, Cynthia, Toonen, Robert J., Crandall, Eric D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8403888/
https://www.ncbi.nlm.nih.gov/pubmed/34404731
http://dx.doi.org/10.1073/pnas.2107934118
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author Toczydlowski, Rachel H.
Liggins, Libby
Gaither, Michelle R.
Anderson, Tanner J.
Barton, Randi L.
Berg, Justin T.
Beskid, Sofia G.
Davis, Beth
Delgado, Alonso
Farrell, Emily
Ghoojaei, Maryam
Himmelsbach, Nan
Holmes, Ann E.
Queeno, Samantha R.
Trinh, Thienthanh
Weyand, Courtney A.
Bradburd, Gideon S.
Riginos, Cynthia
Toonen, Robert J.
Crandall, Eric D.
author_facet Toczydlowski, Rachel H.
Liggins, Libby
Gaither, Michelle R.
Anderson, Tanner J.
Barton, Randi L.
Berg, Justin T.
Beskid, Sofia G.
Davis, Beth
Delgado, Alonso
Farrell, Emily
Ghoojaei, Maryam
Himmelsbach, Nan
Holmes, Ann E.
Queeno, Samantha R.
Trinh, Thienthanh
Weyand, Courtney A.
Bradburd, Gideon S.
Riginos, Cynthia
Toonen, Robert J.
Crandall, Eric D.
author_sort Toczydlowski, Rachel H.
collection PubMed
description Genomic data are being produced and archived at a prodigious rate, and current studies could become historical baselines for future global genetic diversity analyses and monitoring programs. However, when we evaluated the potential utility of genomic data from wild and domesticated eukaryote species in the world’s largest genomic data repository, we found that most archived genomic datasets (86%) lacked the spatiotemporal metadata necessary for genetic biodiversity surveillance. Labor-intensive scouring of a subset of published papers yielded geospatial coordinates and collection years for only 33% (39% if place names were considered) of these genomic datasets. Streamlined data input processes, updated metadata deposition policies, and enhanced scientific community awareness are urgently needed to preserve these irreplaceable records of today’s genetic biodiversity and to plug the growing metadata gap.
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spelling pubmed-84038882021-09-14 Poor data stewardship will hinder global genetic diversity surveillance Toczydlowski, Rachel H. Liggins, Libby Gaither, Michelle R. Anderson, Tanner J. Barton, Randi L. Berg, Justin T. Beskid, Sofia G. Davis, Beth Delgado, Alonso Farrell, Emily Ghoojaei, Maryam Himmelsbach, Nan Holmes, Ann E. Queeno, Samantha R. Trinh, Thienthanh Weyand, Courtney A. Bradburd, Gideon S. Riginos, Cynthia Toonen, Robert J. Crandall, Eric D. Proc Natl Acad Sci U S A Biological Sciences Genomic data are being produced and archived at a prodigious rate, and current studies could become historical baselines for future global genetic diversity analyses and monitoring programs. However, when we evaluated the potential utility of genomic data from wild and domesticated eukaryote species in the world’s largest genomic data repository, we found that most archived genomic datasets (86%) lacked the spatiotemporal metadata necessary for genetic biodiversity surveillance. Labor-intensive scouring of a subset of published papers yielded geospatial coordinates and collection years for only 33% (39% if place names were considered) of these genomic datasets. Streamlined data input processes, updated metadata deposition policies, and enhanced scientific community awareness are urgently needed to preserve these irreplaceable records of today’s genetic biodiversity and to plug the growing metadata gap. National Academy of Sciences 2021-08-24 2021-08-17 /pmc/articles/PMC8403888/ /pubmed/34404731 http://dx.doi.org/10.1073/pnas.2107934118 Text en Copyright © 2021 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by/4.0/This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Biological Sciences
Toczydlowski, Rachel H.
Liggins, Libby
Gaither, Michelle R.
Anderson, Tanner J.
Barton, Randi L.
Berg, Justin T.
Beskid, Sofia G.
Davis, Beth
Delgado, Alonso
Farrell, Emily
Ghoojaei, Maryam
Himmelsbach, Nan
Holmes, Ann E.
Queeno, Samantha R.
Trinh, Thienthanh
Weyand, Courtney A.
Bradburd, Gideon S.
Riginos, Cynthia
Toonen, Robert J.
Crandall, Eric D.
Poor data stewardship will hinder global genetic diversity surveillance
title Poor data stewardship will hinder global genetic diversity surveillance
title_full Poor data stewardship will hinder global genetic diversity surveillance
title_fullStr Poor data stewardship will hinder global genetic diversity surveillance
title_full_unstemmed Poor data stewardship will hinder global genetic diversity surveillance
title_short Poor data stewardship will hinder global genetic diversity surveillance
title_sort poor data stewardship will hinder global genetic diversity surveillance
topic Biological Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8403888/
https://www.ncbi.nlm.nih.gov/pubmed/34404731
http://dx.doi.org/10.1073/pnas.2107934118
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