Cargando…
Poor data stewardship will hinder global genetic diversity surveillance
Genomic data are being produced and archived at a prodigious rate, and current studies could become historical baselines for future global genetic diversity analyses and monitoring programs. However, when we evaluated the potential utility of genomic data from wild and domesticated eukaryote species...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8403888/ https://www.ncbi.nlm.nih.gov/pubmed/34404731 http://dx.doi.org/10.1073/pnas.2107934118 |
_version_ | 1783746071217831936 |
---|---|
author | Toczydlowski, Rachel H. Liggins, Libby Gaither, Michelle R. Anderson, Tanner J. Barton, Randi L. Berg, Justin T. Beskid, Sofia G. Davis, Beth Delgado, Alonso Farrell, Emily Ghoojaei, Maryam Himmelsbach, Nan Holmes, Ann E. Queeno, Samantha R. Trinh, Thienthanh Weyand, Courtney A. Bradburd, Gideon S. Riginos, Cynthia Toonen, Robert J. Crandall, Eric D. |
author_facet | Toczydlowski, Rachel H. Liggins, Libby Gaither, Michelle R. Anderson, Tanner J. Barton, Randi L. Berg, Justin T. Beskid, Sofia G. Davis, Beth Delgado, Alonso Farrell, Emily Ghoojaei, Maryam Himmelsbach, Nan Holmes, Ann E. Queeno, Samantha R. Trinh, Thienthanh Weyand, Courtney A. Bradburd, Gideon S. Riginos, Cynthia Toonen, Robert J. Crandall, Eric D. |
author_sort | Toczydlowski, Rachel H. |
collection | PubMed |
description | Genomic data are being produced and archived at a prodigious rate, and current studies could become historical baselines for future global genetic diversity analyses and monitoring programs. However, when we evaluated the potential utility of genomic data from wild and domesticated eukaryote species in the world’s largest genomic data repository, we found that most archived genomic datasets (86%) lacked the spatiotemporal metadata necessary for genetic biodiversity surveillance. Labor-intensive scouring of a subset of published papers yielded geospatial coordinates and collection years for only 33% (39% if place names were considered) of these genomic datasets. Streamlined data input processes, updated metadata deposition policies, and enhanced scientific community awareness are urgently needed to preserve these irreplaceable records of today’s genetic biodiversity and to plug the growing metadata gap. |
format | Online Article Text |
id | pubmed-8403888 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-84038882021-09-14 Poor data stewardship will hinder global genetic diversity surveillance Toczydlowski, Rachel H. Liggins, Libby Gaither, Michelle R. Anderson, Tanner J. Barton, Randi L. Berg, Justin T. Beskid, Sofia G. Davis, Beth Delgado, Alonso Farrell, Emily Ghoojaei, Maryam Himmelsbach, Nan Holmes, Ann E. Queeno, Samantha R. Trinh, Thienthanh Weyand, Courtney A. Bradburd, Gideon S. Riginos, Cynthia Toonen, Robert J. Crandall, Eric D. Proc Natl Acad Sci U S A Biological Sciences Genomic data are being produced and archived at a prodigious rate, and current studies could become historical baselines for future global genetic diversity analyses and monitoring programs. However, when we evaluated the potential utility of genomic data from wild and domesticated eukaryote species in the world’s largest genomic data repository, we found that most archived genomic datasets (86%) lacked the spatiotemporal metadata necessary for genetic biodiversity surveillance. Labor-intensive scouring of a subset of published papers yielded geospatial coordinates and collection years for only 33% (39% if place names were considered) of these genomic datasets. Streamlined data input processes, updated metadata deposition policies, and enhanced scientific community awareness are urgently needed to preserve these irreplaceable records of today’s genetic biodiversity and to plug the growing metadata gap. National Academy of Sciences 2021-08-24 2021-08-17 /pmc/articles/PMC8403888/ /pubmed/34404731 http://dx.doi.org/10.1073/pnas.2107934118 Text en Copyright © 2021 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by/4.0/This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Biological Sciences Toczydlowski, Rachel H. Liggins, Libby Gaither, Michelle R. Anderson, Tanner J. Barton, Randi L. Berg, Justin T. Beskid, Sofia G. Davis, Beth Delgado, Alonso Farrell, Emily Ghoojaei, Maryam Himmelsbach, Nan Holmes, Ann E. Queeno, Samantha R. Trinh, Thienthanh Weyand, Courtney A. Bradburd, Gideon S. Riginos, Cynthia Toonen, Robert J. Crandall, Eric D. Poor data stewardship will hinder global genetic diversity surveillance |
title | Poor data stewardship will hinder global genetic diversity surveillance |
title_full | Poor data stewardship will hinder global genetic diversity surveillance |
title_fullStr | Poor data stewardship will hinder global genetic diversity surveillance |
title_full_unstemmed | Poor data stewardship will hinder global genetic diversity surveillance |
title_short | Poor data stewardship will hinder global genetic diversity surveillance |
title_sort | poor data stewardship will hinder global genetic diversity surveillance |
topic | Biological Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8403888/ https://www.ncbi.nlm.nih.gov/pubmed/34404731 http://dx.doi.org/10.1073/pnas.2107934118 |
work_keys_str_mv | AT toczydlowskirachelh poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT ligginslibby poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT gaithermicheller poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT andersontannerj poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT bartonrandil poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT bergjustint poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT beskidsofiag poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT davisbeth poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT delgadoalonso poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT farrellemily poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT ghoojaeimaryam poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT himmelsbachnan poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT holmesanne poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT queenosamanthar poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT trinhthienthanh poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT weyandcourtneya poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT bradburdgideons poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT riginoscynthia poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT toonenrobertj poordatastewardshipwillhinderglobalgeneticdiversitysurveillance AT crandallericd poordatastewardshipwillhinderglobalgeneticdiversitysurveillance |