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DArT-based evaluation of soybean germplasm from Polish Gene Bank

OBJECTIVE: Soybean is an important plant used for food, feed and many industrial purposes. Interest in soybean breeding is growing in Central Europe, including Poland. A very large number of soybean accessions are stored in gene banks, but less than 1% of them have been used for breeding. Here, we p...

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Autores principales: Czembor, Elzbieta, Czembor, Jerzy H., Suchecki, Radoslaw, Watson-Haigh, Nathan S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8404325/
https://www.ncbi.nlm.nih.gov/pubmed/34461984
http://dx.doi.org/10.1186/s13104-021-05750-1
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author Czembor, Elzbieta
Czembor, Jerzy H.
Suchecki, Radoslaw
Watson-Haigh, Nathan S.
author_facet Czembor, Elzbieta
Czembor, Jerzy H.
Suchecki, Radoslaw
Watson-Haigh, Nathan S.
author_sort Czembor, Elzbieta
collection PubMed
description OBJECTIVE: Soybean is an important plant used for food, feed and many industrial purposes. Interest in soybean breeding is growing in Central Europe, including Poland. A very large number of soybean accessions are stored in gene banks, but less than 1% of them have been used for breeding. Here, we present genotypic data as well as phenotypic data on plant and seed performance, including seed chlorophyll fluorescence traits, and on yield components within a collection of soybean accessions that are conserved in the Polish Gene Bank at the Plant Breeding and Acclimatization Institute-National Research Institute. RESULTS: The materials used consisted of sub-collections: 79 Polish genotypes, including old traditional cultivars, 24 Canadian, 21 American, 21 Swedish and 31 from Central and Eastern European Countries, 9 from France and 6 from Japan. In total, 9602 high quality SNPs were derived from DArTseq, a method utilising GBS technology. GWAS, performed with the BLINK model, revealed that a total of 41 significant SNPs were mapped for days to flowering, flower colour, plant height, days to pod formation, 100 seed weight, pod colour, seeds and hilum colour and steady-state chlorophyll fluorescence under light (Ft_Lss). This is the first report about the diversity of traditional old Polish soybean cultivars. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-021-05750-1.
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spelling pubmed-84043252021-08-31 DArT-based evaluation of soybean germplasm from Polish Gene Bank Czembor, Elzbieta Czembor, Jerzy H. Suchecki, Radoslaw Watson-Haigh, Nathan S. BMC Res Notes Research Note OBJECTIVE: Soybean is an important plant used for food, feed and many industrial purposes. Interest in soybean breeding is growing in Central Europe, including Poland. A very large number of soybean accessions are stored in gene banks, but less than 1% of them have been used for breeding. Here, we present genotypic data as well as phenotypic data on plant and seed performance, including seed chlorophyll fluorescence traits, and on yield components within a collection of soybean accessions that are conserved in the Polish Gene Bank at the Plant Breeding and Acclimatization Institute-National Research Institute. RESULTS: The materials used consisted of sub-collections: 79 Polish genotypes, including old traditional cultivars, 24 Canadian, 21 American, 21 Swedish and 31 from Central and Eastern European Countries, 9 from France and 6 from Japan. In total, 9602 high quality SNPs were derived from DArTseq, a method utilising GBS technology. GWAS, performed with the BLINK model, revealed that a total of 41 significant SNPs were mapped for days to flowering, flower colour, plant height, days to pod formation, 100 seed weight, pod colour, seeds and hilum colour and steady-state chlorophyll fluorescence under light (Ft_Lss). This is the first report about the diversity of traditional old Polish soybean cultivars. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-021-05750-1. BioMed Central 2021-08-30 /pmc/articles/PMC8404325/ /pubmed/34461984 http://dx.doi.org/10.1186/s13104-021-05750-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Note
Czembor, Elzbieta
Czembor, Jerzy H.
Suchecki, Radoslaw
Watson-Haigh, Nathan S.
DArT-based evaluation of soybean germplasm from Polish Gene Bank
title DArT-based evaluation of soybean germplasm from Polish Gene Bank
title_full DArT-based evaluation of soybean germplasm from Polish Gene Bank
title_fullStr DArT-based evaluation of soybean germplasm from Polish Gene Bank
title_full_unstemmed DArT-based evaluation of soybean germplasm from Polish Gene Bank
title_short DArT-based evaluation of soybean germplasm from Polish Gene Bank
title_sort dart-based evaluation of soybean germplasm from polish gene bank
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8404325/
https://www.ncbi.nlm.nih.gov/pubmed/34461984
http://dx.doi.org/10.1186/s13104-021-05750-1
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