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The complete chloroplast genome sequence of Callitriche palustris (Plantaginaceae)
Callitriche palustris L. is an annual aquatic or marsh plant, wide spread in temperate regions throughout the world. In present study, we sequenced, assembled and annotated the complete chloroplast (cp) genome of C. palustris. The length of C. palustris complete cp genome was 150,138 bp, with a typi...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8405061/ https://www.ncbi.nlm.nih.gov/pubmed/34471702 http://dx.doi.org/10.1080/23802359.2021.1967802 |
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author | Yu, Jiaojun Dong, Hongjin |
author_facet | Yu, Jiaojun Dong, Hongjin |
author_sort | Yu, Jiaojun |
collection | PubMed |
description | Callitriche palustris L. is an annual aquatic or marsh plant, wide spread in temperate regions throughout the world. In present study, we sequenced, assembled and annotated the complete chloroplast (cp) genome of C. palustris. The length of C. palustris complete cp genome was 150,138 bp, with a typical quadripartite structure comprising a pair of inverted repeat regions (IRs; 25,667 bp), a large single copy region (LSC; 81,432 bp) and a small single copy region (SSC; 17,372 bp). The whole cp genome contained 134 genes, including 89 protein-coding genes (PCGs), 37 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. The maximum likelihood (ML) phylogenetic analysis indicated that C. palustris was a member of Plantaginaceae, but the relationships between subfamilies and tribes need more samplings. This cp genome would provide a valuable genetic resource for C. palustris’ phylogenetic study. |
format | Online Article Text |
id | pubmed-8405061 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-84050612021-08-31 The complete chloroplast genome sequence of Callitriche palustris (Plantaginaceae) Yu, Jiaojun Dong, Hongjin Mitochondrial DNA B Resour Mitogenome Announcement Callitriche palustris L. is an annual aquatic or marsh plant, wide spread in temperate regions throughout the world. In present study, we sequenced, assembled and annotated the complete chloroplast (cp) genome of C. palustris. The length of C. palustris complete cp genome was 150,138 bp, with a typical quadripartite structure comprising a pair of inverted repeat regions (IRs; 25,667 bp), a large single copy region (LSC; 81,432 bp) and a small single copy region (SSC; 17,372 bp). The whole cp genome contained 134 genes, including 89 protein-coding genes (PCGs), 37 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. The maximum likelihood (ML) phylogenetic analysis indicated that C. palustris was a member of Plantaginaceae, but the relationships between subfamilies and tribes need more samplings. This cp genome would provide a valuable genetic resource for C. palustris’ phylogenetic study. Taylor & Francis 2021-08-30 /pmc/articles/PMC8405061/ /pubmed/34471702 http://dx.doi.org/10.1080/23802359.2021.1967802 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Yu, Jiaojun Dong, Hongjin The complete chloroplast genome sequence of Callitriche palustris (Plantaginaceae) |
title | The complete chloroplast genome sequence of Callitriche palustris (Plantaginaceae) |
title_full | The complete chloroplast genome sequence of Callitriche palustris (Plantaginaceae) |
title_fullStr | The complete chloroplast genome sequence of Callitriche palustris (Plantaginaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Callitriche palustris (Plantaginaceae) |
title_short | The complete chloroplast genome sequence of Callitriche palustris (Plantaginaceae) |
title_sort | complete chloroplast genome sequence of callitriche palustris (plantaginaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8405061/ https://www.ncbi.nlm.nih.gov/pubmed/34471702 http://dx.doi.org/10.1080/23802359.2021.1967802 |
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