Complete chloroplast genome of the mixotrophic chrysophyte Poterioochromonas malhamensis (Ochromonadales, Synurophyceae) from Van Lake in Eastern Anatolia

We sequenced the chloroplast genome of Poterioochromonas malhamensis (Pringsheim) R.A.Andersen strain SZCZR2049, which originates from Van Lake in Turkey. This genome is 133,923 bp long, and like those currently available for six phototrophic chrysophytes, it displays a long, gene-rich inverted repe...

Descripción completa

Detalles Bibliográficos
Autores principales: Gastineau, Romain, Yilmaz, Elif, Solak, Cüneyt Nadir, Lemieux, Claude, Turmel, Monique, Witkowski, Andrzej
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8405094/
https://www.ncbi.nlm.nih.gov/pubmed/34471690
http://dx.doi.org/10.1080/23802359.2021.1923416
_version_ 1783746265435078656
author Gastineau, Romain
Yilmaz, Elif
Solak, Cüneyt Nadir
Lemieux, Claude
Turmel, Monique
Witkowski, Andrzej
author_facet Gastineau, Romain
Yilmaz, Elif
Solak, Cüneyt Nadir
Lemieux, Claude
Turmel, Monique
Witkowski, Andrzej
author_sort Gastineau, Romain
collection PubMed
description We sequenced the chloroplast genome of Poterioochromonas malhamensis (Pringsheim) R.A.Andersen strain SZCZR2049, which originates from Van Lake in Turkey. This genome is 133,923 bp long, and like those currently available for six phototrophic chrysophytes, it displays a long, gene-rich inverted repeat and a very short single-copy region. Compared to its chrysophyte counterparts, the P. malhamensis inverted repeat differs noticeably in gene content and the whole genome is missing 11 protein-coding genes. The maximum likelihood phylogeny inferred from concatenated protein-coding genes positioned P. malhamensis among the chrysophytes sensu lato as sister to the clade containing the Synurales (Synurophyceae) and Chromulinales (Chrysophyceae).
format Online
Article
Text
id pubmed-8405094
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-84050942021-08-31 Complete chloroplast genome of the mixotrophic chrysophyte Poterioochromonas malhamensis (Ochromonadales, Synurophyceae) from Van Lake in Eastern Anatolia Gastineau, Romain Yilmaz, Elif Solak, Cüneyt Nadir Lemieux, Claude Turmel, Monique Witkowski, Andrzej Mitochondrial DNA B Resour Mitogenome Announcement We sequenced the chloroplast genome of Poterioochromonas malhamensis (Pringsheim) R.A.Andersen strain SZCZR2049, which originates from Van Lake in Turkey. This genome is 133,923 bp long, and like those currently available for six phototrophic chrysophytes, it displays a long, gene-rich inverted repeat and a very short single-copy region. Compared to its chrysophyte counterparts, the P. malhamensis inverted repeat differs noticeably in gene content and the whole genome is missing 11 protein-coding genes. The maximum likelihood phylogeny inferred from concatenated protein-coding genes positioned P. malhamensis among the chrysophytes sensu lato as sister to the clade containing the Synurales (Synurophyceae) and Chromulinales (Chrysophyceae). Taylor & Francis 2021-08-27 /pmc/articles/PMC8405094/ /pubmed/34471690 http://dx.doi.org/10.1080/23802359.2021.1923416 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Gastineau, Romain
Yilmaz, Elif
Solak, Cüneyt Nadir
Lemieux, Claude
Turmel, Monique
Witkowski, Andrzej
Complete chloroplast genome of the mixotrophic chrysophyte Poterioochromonas malhamensis (Ochromonadales, Synurophyceae) from Van Lake in Eastern Anatolia
title Complete chloroplast genome of the mixotrophic chrysophyte Poterioochromonas malhamensis (Ochromonadales, Synurophyceae) from Van Lake in Eastern Anatolia
title_full Complete chloroplast genome of the mixotrophic chrysophyte Poterioochromonas malhamensis (Ochromonadales, Synurophyceae) from Van Lake in Eastern Anatolia
title_fullStr Complete chloroplast genome of the mixotrophic chrysophyte Poterioochromonas malhamensis (Ochromonadales, Synurophyceae) from Van Lake in Eastern Anatolia
title_full_unstemmed Complete chloroplast genome of the mixotrophic chrysophyte Poterioochromonas malhamensis (Ochromonadales, Synurophyceae) from Van Lake in Eastern Anatolia
title_short Complete chloroplast genome of the mixotrophic chrysophyte Poterioochromonas malhamensis (Ochromonadales, Synurophyceae) from Van Lake in Eastern Anatolia
title_sort complete chloroplast genome of the mixotrophic chrysophyte poterioochromonas malhamensis (ochromonadales, synurophyceae) from van lake in eastern anatolia
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8405094/
https://www.ncbi.nlm.nih.gov/pubmed/34471690
http://dx.doi.org/10.1080/23802359.2021.1923416
work_keys_str_mv AT gastineauromain completechloroplastgenomeofthemixotrophicchrysophytepoterioochromonasmalhamensisochromonadalessynurophyceaefromvanlakeineasternanatolia
AT yilmazelif completechloroplastgenomeofthemixotrophicchrysophytepoterioochromonasmalhamensisochromonadalessynurophyceaefromvanlakeineasternanatolia
AT solakcuneytnadir completechloroplastgenomeofthemixotrophicchrysophytepoterioochromonasmalhamensisochromonadalessynurophyceaefromvanlakeineasternanatolia
AT lemieuxclaude completechloroplastgenomeofthemixotrophicchrysophytepoterioochromonasmalhamensisochromonadalessynurophyceaefromvanlakeineasternanatolia
AT turmelmonique completechloroplastgenomeofthemixotrophicchrysophytepoterioochromonasmalhamensisochromonadalessynurophyceaefromvanlakeineasternanatolia
AT witkowskiandrzej completechloroplastgenomeofthemixotrophicchrysophytepoterioochromonasmalhamensisochromonadalessynurophyceaefromvanlakeineasternanatolia

Ejemplares similares