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Characterization of the complete chloroplast genome of Rohdea wattii (Asparagaceae)

As a kind of rare plant with important medicinal value and breeding value, Rohdea wattii usually grow in dark and damp places. In this study, we reported the complete chloroplast genome of R. wattii. We used a variety of bioinformatics analysis methods to analyze and visualize the chloroplast genome...

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Autores principales: Wang, Yifei, Zhang, Yancheng, Li, Cailin, Zhao, Bo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8405109/
https://www.ncbi.nlm.nih.gov/pubmed/34471695
http://dx.doi.org/10.1080/23802359.2021.1967801
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author Wang, Yifei
Zhang, Yancheng
Li, Cailin
Zhao, Bo
author_facet Wang, Yifei
Zhang, Yancheng
Li, Cailin
Zhao, Bo
author_sort Wang, Yifei
collection PubMed
description As a kind of rare plant with important medicinal value and breeding value, Rohdea wattii usually grow in dark and damp places. In this study, we reported the complete chloroplast genome of R. wattii. We used a variety of bioinformatics analysis methods to analyze and visualize the chloroplast genome and phylogenetic relationships. A typical quadripartite structure was observed in the chloroplast genome of R. wattii with a genome size of 156,487 bp. The length of the large single-copy region (LSC) was 84,969 bp, which was the longest region among the four regions; the second longest was the Inverted repeat region (IR) with 26,451 bp in length; and the smallest was the small single-copy region (SSC) with 18,616 bp in length. The overall GC content of R. wattii chloroplast genome is 37.61%. In addition, a total of 132 genes were identified in the whole genome of R. wattii, which include 86 protein-coding genes, 38 tRNA genes, and eight rRNA genes. Finally, by constructing a phylogenetic tree to analyze the phylogeny of R. wattii, and it indicated that R. wattii and Rohdea chinensis are a close evolutionary relationship.
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spelling pubmed-84051092021-08-31 Characterization of the complete chloroplast genome of Rohdea wattii (Asparagaceae) Wang, Yifei Zhang, Yancheng Li, Cailin Zhao, Bo Mitochondrial DNA B Resour Rapid Communication As a kind of rare plant with important medicinal value and breeding value, Rohdea wattii usually grow in dark and damp places. In this study, we reported the complete chloroplast genome of R. wattii. We used a variety of bioinformatics analysis methods to analyze and visualize the chloroplast genome and phylogenetic relationships. A typical quadripartite structure was observed in the chloroplast genome of R. wattii with a genome size of 156,487 bp. The length of the large single-copy region (LSC) was 84,969 bp, which was the longest region among the four regions; the second longest was the Inverted repeat region (IR) with 26,451 bp in length; and the smallest was the small single-copy region (SSC) with 18,616 bp in length. The overall GC content of R. wattii chloroplast genome is 37.61%. In addition, a total of 132 genes were identified in the whole genome of R. wattii, which include 86 protein-coding genes, 38 tRNA genes, and eight rRNA genes. Finally, by constructing a phylogenetic tree to analyze the phylogeny of R. wattii, and it indicated that R. wattii and Rohdea chinensis are a close evolutionary relationship. Taylor & Francis 2021-08-25 /pmc/articles/PMC8405109/ /pubmed/34471695 http://dx.doi.org/10.1080/23802359.2021.1967801 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Rapid Communication
Wang, Yifei
Zhang, Yancheng
Li, Cailin
Zhao, Bo
Characterization of the complete chloroplast genome of Rohdea wattii (Asparagaceae)
title Characterization of the complete chloroplast genome of Rohdea wattii (Asparagaceae)
title_full Characterization of the complete chloroplast genome of Rohdea wattii (Asparagaceae)
title_fullStr Characterization of the complete chloroplast genome of Rohdea wattii (Asparagaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of Rohdea wattii (Asparagaceae)
title_short Characterization of the complete chloroplast genome of Rohdea wattii (Asparagaceae)
title_sort characterization of the complete chloroplast genome of rohdea wattii (asparagaceae)
topic Rapid Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8405109/
https://www.ncbi.nlm.nih.gov/pubmed/34471695
http://dx.doi.org/10.1080/23802359.2021.1967801
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