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Functional data analysis characterizes the shapes of the first COVID-19 epidemic wave in Italy

We investigate patterns of COVID-19 mortality across 20 Italian regions and their association with mobility, positivity, and socio-demographic, infrastructural and environmental covariates. Notwithstanding limitations in accuracy and resolution of the data available from public sources, we pinpoint...

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Autores principales: Boschi, Tobia, Di Iorio, Jacopo, Testa, Lorenzo, Cremona, Marzia A., Chiaromonte, Francesca
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8405612/
https://www.ncbi.nlm.nih.gov/pubmed/34462450
http://dx.doi.org/10.1038/s41598-021-95866-y
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author Boschi, Tobia
Di Iorio, Jacopo
Testa, Lorenzo
Cremona, Marzia A.
Chiaromonte, Francesca
author_facet Boschi, Tobia
Di Iorio, Jacopo
Testa, Lorenzo
Cremona, Marzia A.
Chiaromonte, Francesca
author_sort Boschi, Tobia
collection PubMed
description We investigate patterns of COVID-19 mortality across 20 Italian regions and their association with mobility, positivity, and socio-demographic, infrastructural and environmental covariates. Notwithstanding limitations in accuracy and resolution of the data available from public sources, we pinpoint significant trends exploiting information in curves and shapes with Functional Data Analysis techniques. These depict two starkly different epidemics; an “exponential” one unfolding in Lombardia and the worst hit areas of the north, and a milder, “flat(tened)” one in the rest of the country—including Veneto, where cases appeared concurrently with Lombardia but aggressive testing was implemented early on. We find that mobility and positivity can predict COVID-19 mortality, also when controlling for relevant covariates. Among the latter, primary care appears to mitigate mortality, and contacts in hospitals, schools and workplaces to aggravate it. The techniques we describe could capture additional and potentially sharper signals if applied to richer data.
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spelling pubmed-84056122021-09-01 Functional data analysis characterizes the shapes of the first COVID-19 epidemic wave in Italy Boschi, Tobia Di Iorio, Jacopo Testa, Lorenzo Cremona, Marzia A. Chiaromonte, Francesca Sci Rep Article We investigate patterns of COVID-19 mortality across 20 Italian regions and their association with mobility, positivity, and socio-demographic, infrastructural and environmental covariates. Notwithstanding limitations in accuracy and resolution of the data available from public sources, we pinpoint significant trends exploiting information in curves and shapes with Functional Data Analysis techniques. These depict two starkly different epidemics; an “exponential” one unfolding in Lombardia and the worst hit areas of the north, and a milder, “flat(tened)” one in the rest of the country—including Veneto, where cases appeared concurrently with Lombardia but aggressive testing was implemented early on. We find that mobility and positivity can predict COVID-19 mortality, also when controlling for relevant covariates. Among the latter, primary care appears to mitigate mortality, and contacts in hospitals, schools and workplaces to aggravate it. The techniques we describe could capture additional and potentially sharper signals if applied to richer data. Nature Publishing Group UK 2021-08-30 /pmc/articles/PMC8405612/ /pubmed/34462450 http://dx.doi.org/10.1038/s41598-021-95866-y Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Boschi, Tobia
Di Iorio, Jacopo
Testa, Lorenzo
Cremona, Marzia A.
Chiaromonte, Francesca
Functional data analysis characterizes the shapes of the first COVID-19 epidemic wave in Italy
title Functional data analysis characterizes the shapes of the first COVID-19 epidemic wave in Italy
title_full Functional data analysis characterizes the shapes of the first COVID-19 epidemic wave in Italy
title_fullStr Functional data analysis characterizes the shapes of the first COVID-19 epidemic wave in Italy
title_full_unstemmed Functional data analysis characterizes the shapes of the first COVID-19 epidemic wave in Italy
title_short Functional data analysis characterizes the shapes of the first COVID-19 epidemic wave in Italy
title_sort functional data analysis characterizes the shapes of the first covid-19 epidemic wave in italy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8405612/
https://www.ncbi.nlm.nih.gov/pubmed/34462450
http://dx.doi.org/10.1038/s41598-021-95866-y
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