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Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid
Polyporus umbellatus is a precious medicinal fungus. Oxalic acid was observed to affect sclerotial formation and sclerotia possessed more medicinal compounds than mycelia. In this study, the transcriptome of P. umbellatus was analysed after the fungus was exposed to various concentrations of oxalic...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8405643/ https://www.ncbi.nlm.nih.gov/pubmed/34462479 http://dx.doi.org/10.1038/s41598-021-96740-7 |
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author | Xing, Yong-Mei Li, Bing Zeng, Xu Zhou, Li-Si Lee, Tae-Soo Lee, Min-Woong Chen, Xiao-Mei Guo, Shun-Xing |
author_facet | Xing, Yong-Mei Li, Bing Zeng, Xu Zhou, Li-Si Lee, Tae-Soo Lee, Min-Woong Chen, Xiao-Mei Guo, Shun-Xing |
author_sort | Xing, Yong-Mei |
collection | PubMed |
description | Polyporus umbellatus is a precious medicinal fungus. Oxalic acid was observed to affect sclerotial formation and sclerotia possessed more medicinal compounds than mycelia. In this study, the transcriptome of P. umbellatus was analysed after the fungus was exposed to various concentrations of oxalic acid. The differentially expressed genes (DEGs) encoding a series of oxidases were upregulated, and reductases were downregulated, in the low-oxalic-acid (Low OA) group compared to the control (No OA) group, while the opposite phenomenon was observed in the high-oxalic-acid (High OA) group. The detection of reactive oxygen species (ROS) in P. umbellatus mycelia was performed visually, and Ca(2+) and H(2)O(2) fluxes were measured using non-invasive micro-test technology (NMT). The sclerotial biomass in the Low OA group increased by 66%, however, no sclerotia formed in the High OA group. The ROS fluorescence intensity increased significantly in the Low OA group but decreased considerably in the High OA group. Ca(2+) and H(2)O(2) influx significantly increased in the Low OA group, while H(2)O(2) exhibited efflux in the High OA group. A higher level of oxidative stress formed in the Low OA group. Different concentrations of oxalic acid were determined to affect P. umbellatus sclerotial formation in different ways. |
format | Online Article Text |
id | pubmed-8405643 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-84056432021-09-01 Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid Xing, Yong-Mei Li, Bing Zeng, Xu Zhou, Li-Si Lee, Tae-Soo Lee, Min-Woong Chen, Xiao-Mei Guo, Shun-Xing Sci Rep Article Polyporus umbellatus is a precious medicinal fungus. Oxalic acid was observed to affect sclerotial formation and sclerotia possessed more medicinal compounds than mycelia. In this study, the transcriptome of P. umbellatus was analysed after the fungus was exposed to various concentrations of oxalic acid. The differentially expressed genes (DEGs) encoding a series of oxidases were upregulated, and reductases were downregulated, in the low-oxalic-acid (Low OA) group compared to the control (No OA) group, while the opposite phenomenon was observed in the high-oxalic-acid (High OA) group. The detection of reactive oxygen species (ROS) in P. umbellatus mycelia was performed visually, and Ca(2+) and H(2)O(2) fluxes were measured using non-invasive micro-test technology (NMT). The sclerotial biomass in the Low OA group increased by 66%, however, no sclerotia formed in the High OA group. The ROS fluorescence intensity increased significantly in the Low OA group but decreased considerably in the High OA group. Ca(2+) and H(2)O(2) influx significantly increased in the Low OA group, while H(2)O(2) exhibited efflux in the High OA group. A higher level of oxidative stress formed in the Low OA group. Different concentrations of oxalic acid were determined to affect P. umbellatus sclerotial formation in different ways. Nature Publishing Group UK 2021-08-30 /pmc/articles/PMC8405643/ /pubmed/34462479 http://dx.doi.org/10.1038/s41598-021-96740-7 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Xing, Yong-Mei Li, Bing Zeng, Xu Zhou, Li-Si Lee, Tae-Soo Lee, Min-Woong Chen, Xiao-Mei Guo, Shun-Xing Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid |
title | Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid |
title_full | Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid |
title_fullStr | Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid |
title_full_unstemmed | Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid |
title_short | Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid |
title_sort | use of transcriptomic profiling to identify candidate genes involved in polyporus umbellatus sclerotial formation affected by oxalic acid |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8405643/ https://www.ncbi.nlm.nih.gov/pubmed/34462479 http://dx.doi.org/10.1038/s41598-021-96740-7 |
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