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Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid

Polyporus umbellatus is a precious medicinal fungus. Oxalic acid was observed to affect sclerotial formation and sclerotia possessed more medicinal compounds than mycelia. In this study, the transcriptome of P. umbellatus was analysed after the fungus was exposed to various concentrations of oxalic...

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Autores principales: Xing, Yong-Mei, Li, Bing, Zeng, Xu, Zhou, Li-Si, Lee, Tae-Soo, Lee, Min-Woong, Chen, Xiao-Mei, Guo, Shun-Xing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8405643/
https://www.ncbi.nlm.nih.gov/pubmed/34462479
http://dx.doi.org/10.1038/s41598-021-96740-7
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author Xing, Yong-Mei
Li, Bing
Zeng, Xu
Zhou, Li-Si
Lee, Tae-Soo
Lee, Min-Woong
Chen, Xiao-Mei
Guo, Shun-Xing
author_facet Xing, Yong-Mei
Li, Bing
Zeng, Xu
Zhou, Li-Si
Lee, Tae-Soo
Lee, Min-Woong
Chen, Xiao-Mei
Guo, Shun-Xing
author_sort Xing, Yong-Mei
collection PubMed
description Polyporus umbellatus is a precious medicinal fungus. Oxalic acid was observed to affect sclerotial formation and sclerotia possessed more medicinal compounds than mycelia. In this study, the transcriptome of P. umbellatus was analysed after the fungus was exposed to various concentrations of oxalic acid. The differentially expressed genes (DEGs) encoding a series of oxidases were upregulated, and reductases were downregulated, in the low-oxalic-acid (Low OA) group compared to the control (No OA) group, while the opposite phenomenon was observed in the high-oxalic-acid (High OA) group. The detection of reactive oxygen species (ROS) in P. umbellatus mycelia was performed visually, and Ca(2+) and H(2)O(2) fluxes were measured using non-invasive micro-test technology (NMT). The sclerotial biomass in the Low OA group increased by 66%, however, no sclerotia formed in the High OA group. The ROS fluorescence intensity increased significantly in the Low OA group but decreased considerably in the High OA group. Ca(2+) and H(2)O(2) influx significantly increased in the Low OA group, while H(2)O(2) exhibited efflux in the High OA group. A higher level of oxidative stress formed in the Low OA group. Different concentrations of oxalic acid were determined to affect P. umbellatus sclerotial formation in different ways.
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spelling pubmed-84056432021-09-01 Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid Xing, Yong-Mei Li, Bing Zeng, Xu Zhou, Li-Si Lee, Tae-Soo Lee, Min-Woong Chen, Xiao-Mei Guo, Shun-Xing Sci Rep Article Polyporus umbellatus is a precious medicinal fungus. Oxalic acid was observed to affect sclerotial formation and sclerotia possessed more medicinal compounds than mycelia. In this study, the transcriptome of P. umbellatus was analysed after the fungus was exposed to various concentrations of oxalic acid. The differentially expressed genes (DEGs) encoding a series of oxidases were upregulated, and reductases were downregulated, in the low-oxalic-acid (Low OA) group compared to the control (No OA) group, while the opposite phenomenon was observed in the high-oxalic-acid (High OA) group. The detection of reactive oxygen species (ROS) in P. umbellatus mycelia was performed visually, and Ca(2+) and H(2)O(2) fluxes were measured using non-invasive micro-test technology (NMT). The sclerotial biomass in the Low OA group increased by 66%, however, no sclerotia formed in the High OA group. The ROS fluorescence intensity increased significantly in the Low OA group but decreased considerably in the High OA group. Ca(2+) and H(2)O(2) influx significantly increased in the Low OA group, while H(2)O(2) exhibited efflux in the High OA group. A higher level of oxidative stress formed in the Low OA group. Different concentrations of oxalic acid were determined to affect P. umbellatus sclerotial formation in different ways. Nature Publishing Group UK 2021-08-30 /pmc/articles/PMC8405643/ /pubmed/34462479 http://dx.doi.org/10.1038/s41598-021-96740-7 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Xing, Yong-Mei
Li, Bing
Zeng, Xu
Zhou, Li-Si
Lee, Tae-Soo
Lee, Min-Woong
Chen, Xiao-Mei
Guo, Shun-Xing
Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid
title Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid
title_full Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid
title_fullStr Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid
title_full_unstemmed Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid
title_short Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid
title_sort use of transcriptomic profiling to identify candidate genes involved in polyporus umbellatus sclerotial formation affected by oxalic acid
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8405643/
https://www.ncbi.nlm.nih.gov/pubmed/34462479
http://dx.doi.org/10.1038/s41598-021-96740-7
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