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Superpixel image segmentation of VISTA expression in colorectal cancer and its relationship to the tumoral microenvironment

Colorectal cancer (CRC) is the third most common cause of cancer related death in the United States (Jasperson et al. in Gastroenterology 138:2044–2058, 10.1053/j.gastro.2010.01.054, 2010). Many studies have explored prognostic factors in CRC. Today, much focus has been placed on the tumor microenvi...

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Autores principales: Wu, Dongling, Hacking, Sean, Vitkovski, Taisia, Nasim, Mansoor
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8408240/
https://www.ncbi.nlm.nih.gov/pubmed/34465822
http://dx.doi.org/10.1038/s41598-021-96417-1
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author Wu, Dongling
Hacking, Sean
Vitkovski, Taisia
Nasim, Mansoor
author_facet Wu, Dongling
Hacking, Sean
Vitkovski, Taisia
Nasim, Mansoor
author_sort Wu, Dongling
collection PubMed
description Colorectal cancer (CRC) is the third most common cause of cancer related death in the United States (Jasperson et al. in Gastroenterology 138:2044–2058, 10.1053/j.gastro.2010.01.054, 2010). Many studies have explored prognostic factors in CRC. Today, much focus has been placed on the tumor microenvironment, including different immune cells and the extracellular matrix (ECM). The present study aims to evaluate the role of V-domain immunoglobulin suppressor of T cell activation (VISTA). We utilized QuPath for whole slides image analysis, performing superpixel image segmentation (SIS) on a 226 patient-cohort. High VISTA expression correlated with better disease-free survival (DFS), high tumor infiltrative lymphocyte, microsatellite instability, BRAF mutational status as well as lower tumor stage. High VISTA expression was also associated with mature stromal differentiation (SD). When cohorts were separated based on SD and MMR, only patients with immature SD and microsatellite stability were found to correlate VISTA expression with DFS. Considering raised VISTA expression is associated with improved survival, TILs, mature SD, and MMR in CRC; careful, well-designed clinical trials should be pursued which incorporate the underlying tumoral microenvironment.
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spelling pubmed-84082402021-09-03 Superpixel image segmentation of VISTA expression in colorectal cancer and its relationship to the tumoral microenvironment Wu, Dongling Hacking, Sean Vitkovski, Taisia Nasim, Mansoor Sci Rep Article Colorectal cancer (CRC) is the third most common cause of cancer related death in the United States (Jasperson et al. in Gastroenterology 138:2044–2058, 10.1053/j.gastro.2010.01.054, 2010). Many studies have explored prognostic factors in CRC. Today, much focus has been placed on the tumor microenvironment, including different immune cells and the extracellular matrix (ECM). The present study aims to evaluate the role of V-domain immunoglobulin suppressor of T cell activation (VISTA). We utilized QuPath for whole slides image analysis, performing superpixel image segmentation (SIS) on a 226 patient-cohort. High VISTA expression correlated with better disease-free survival (DFS), high tumor infiltrative lymphocyte, microsatellite instability, BRAF mutational status as well as lower tumor stage. High VISTA expression was also associated with mature stromal differentiation (SD). When cohorts were separated based on SD and MMR, only patients with immature SD and microsatellite stability were found to correlate VISTA expression with DFS. Considering raised VISTA expression is associated with improved survival, TILs, mature SD, and MMR in CRC; careful, well-designed clinical trials should be pursued which incorporate the underlying tumoral microenvironment. Nature Publishing Group UK 2021-08-31 /pmc/articles/PMC8408240/ /pubmed/34465822 http://dx.doi.org/10.1038/s41598-021-96417-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Wu, Dongling
Hacking, Sean
Vitkovski, Taisia
Nasim, Mansoor
Superpixel image segmentation of VISTA expression in colorectal cancer and its relationship to the tumoral microenvironment
title Superpixel image segmentation of VISTA expression in colorectal cancer and its relationship to the tumoral microenvironment
title_full Superpixel image segmentation of VISTA expression in colorectal cancer and its relationship to the tumoral microenvironment
title_fullStr Superpixel image segmentation of VISTA expression in colorectal cancer and its relationship to the tumoral microenvironment
title_full_unstemmed Superpixel image segmentation of VISTA expression in colorectal cancer and its relationship to the tumoral microenvironment
title_short Superpixel image segmentation of VISTA expression in colorectal cancer and its relationship to the tumoral microenvironment
title_sort superpixel image segmentation of vista expression in colorectal cancer and its relationship to the tumoral microenvironment
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8408240/
https://www.ncbi.nlm.nih.gov/pubmed/34465822
http://dx.doi.org/10.1038/s41598-021-96417-1
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