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COVID-19 modelling by time-varying transmission rate associated with mobility trend of driving via Apple Maps

Compartment-based infectious disease models that consider the transmission rate (or contact rate) as a constant during the course of an epidemic can be limiting regarding effective capture of the dynamics of infectious disease. This study proposed a novel approach based on a dynamic time-varying tra...

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Detalles Bibliográficos
Autores principales: Jing, Min, Ng, Kok Yew, Namee, Brian Mac, Biglarbeigi, Pardis, Brisk, Rob, Bond, Raymond, Finlay, Dewar, McLaughlin, James
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Authors. Published by Elsevier Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8410221/
https://www.ncbi.nlm.nih.gov/pubmed/34481056
http://dx.doi.org/10.1016/j.jbi.2021.103905
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author Jing, Min
Ng, Kok Yew
Namee, Brian Mac
Biglarbeigi, Pardis
Brisk, Rob
Bond, Raymond
Finlay, Dewar
McLaughlin, James
author_facet Jing, Min
Ng, Kok Yew
Namee, Brian Mac
Biglarbeigi, Pardis
Brisk, Rob
Bond, Raymond
Finlay, Dewar
McLaughlin, James
author_sort Jing, Min
collection PubMed
description Compartment-based infectious disease models that consider the transmission rate (or contact rate) as a constant during the course of an epidemic can be limiting regarding effective capture of the dynamics of infectious disease. This study proposed a novel approach based on a dynamic time-varying transmission rate with a control rate governing the speed of disease spread, which may be associated with the information related to infectious disease intervention. Integration of multiple sources of data with disease modelling has the potential to improve modelling performance. Taking the global mobility trend of vehicle driving available via Apple Maps as an example, this study explored different ways of processing the mobility trend data and investigated their relationship with the control rate. The proposed method was evaluated based on COVID-19 data from six European countries. The results suggest that the proposed model with dynamic transmission rate improved the performance of model fitting and forecasting during the early stage of the pandemic. Positive correlation has been found between the average daily change of mobility trend and control rate. The results encourage further development for incorporation of multiple resources into infectious disease modelling in the future.
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spelling pubmed-84102212021-09-02 COVID-19 modelling by time-varying transmission rate associated with mobility trend of driving via Apple Maps Jing, Min Ng, Kok Yew Namee, Brian Mac Biglarbeigi, Pardis Brisk, Rob Bond, Raymond Finlay, Dewar McLaughlin, James J Biomed Inform Original Research Compartment-based infectious disease models that consider the transmission rate (or contact rate) as a constant during the course of an epidemic can be limiting regarding effective capture of the dynamics of infectious disease. This study proposed a novel approach based on a dynamic time-varying transmission rate with a control rate governing the speed of disease spread, which may be associated with the information related to infectious disease intervention. Integration of multiple sources of data with disease modelling has the potential to improve modelling performance. Taking the global mobility trend of vehicle driving available via Apple Maps as an example, this study explored different ways of processing the mobility trend data and investigated their relationship with the control rate. The proposed method was evaluated based on COVID-19 data from six European countries. The results suggest that the proposed model with dynamic transmission rate improved the performance of model fitting and forecasting during the early stage of the pandemic. Positive correlation has been found between the average daily change of mobility trend and control rate. The results encourage further development for incorporation of multiple resources into infectious disease modelling in the future. The Authors. Published by Elsevier Inc. 2021-10 2021-09-02 /pmc/articles/PMC8410221/ /pubmed/34481056 http://dx.doi.org/10.1016/j.jbi.2021.103905 Text en © 2021 The Authors Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Original Research
Jing, Min
Ng, Kok Yew
Namee, Brian Mac
Biglarbeigi, Pardis
Brisk, Rob
Bond, Raymond
Finlay, Dewar
McLaughlin, James
COVID-19 modelling by time-varying transmission rate associated with mobility trend of driving via Apple Maps
title COVID-19 modelling by time-varying transmission rate associated with mobility trend of driving via Apple Maps
title_full COVID-19 modelling by time-varying transmission rate associated with mobility trend of driving via Apple Maps
title_fullStr COVID-19 modelling by time-varying transmission rate associated with mobility trend of driving via Apple Maps
title_full_unstemmed COVID-19 modelling by time-varying transmission rate associated with mobility trend of driving via Apple Maps
title_short COVID-19 modelling by time-varying transmission rate associated with mobility trend of driving via Apple Maps
title_sort covid-19 modelling by time-varying transmission rate associated with mobility trend of driving via apple maps
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8410221/
https://www.ncbi.nlm.nih.gov/pubmed/34481056
http://dx.doi.org/10.1016/j.jbi.2021.103905
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