Cargando…

Detection of COVID-19 findings by the local interpretable model-agnostic explanations method of types-based activations extracted from CNNs

Covid-19 is a disease that affects the upper and lower respiratory tract and has fatal consequences in individuals. Early diagnosis of COVID-19 disease is important. Datasets used in this study were collected from hospitals in Istanbul. The first dataset consists of COVID-19, viral pneumonia, and ba...

Descripción completa

Detalles Bibliográficos
Autores principales: Toğaçar, Mesut, Muzoğlu, Nedim, Ergen, Burhan, Yarman, Bekir Sıddık Binboğa, Halefoğlu, Ahmet Mesrur
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8410514/
https://www.ncbi.nlm.nih.gov/pubmed/34490055
http://dx.doi.org/10.1016/j.bspc.2021.103128
_version_ 1783747127471505408
author Toğaçar, Mesut
Muzoğlu, Nedim
Ergen, Burhan
Yarman, Bekir Sıddık Binboğa
Halefoğlu, Ahmet Mesrur
author_facet Toğaçar, Mesut
Muzoğlu, Nedim
Ergen, Burhan
Yarman, Bekir Sıddık Binboğa
Halefoğlu, Ahmet Mesrur
author_sort Toğaçar, Mesut
collection PubMed
description Covid-19 is a disease that affects the upper and lower respiratory tract and has fatal consequences in individuals. Early diagnosis of COVID-19 disease is important. Datasets used in this study were collected from hospitals in Istanbul. The first dataset consists of COVID-19, viral pneumonia, and bacterial pneumonia types. The second dataset consists of the following findings of COVID-19: ground glass opacity, ground glass opacity, and nodule, crazy paving pattern, consolidation, consolidation, and ground glass. The approach suggested in this paper is based on artificial intelligence. The proposed approach consists of three steps. As a first step, preprocessing was applied and, in this step, the Fourier Transform and Gradient-weighted Class Activation Mapping methods were applied to the input images together. In the second step, type-based activation sets were created with three different ResNet models before the Softmax method. In the third step, the best type-based activations were selected among the CNN models using the local interpretable model-agnostic explanations method and re-classified with the Softmax method. An overall accuracy success of 99.15% was achieved with the proposed approach in the dataset containing three types of image sets. In the dataset consisting of COVID-19 findings, an overall accuracy success of 99.62% was achieved with the recommended approach.
format Online
Article
Text
id pubmed-8410514
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Elsevier Ltd.
record_format MEDLINE/PubMed
spelling pubmed-84105142021-09-02 Detection of COVID-19 findings by the local interpretable model-agnostic explanations method of types-based activations extracted from CNNs Toğaçar, Mesut Muzoğlu, Nedim Ergen, Burhan Yarman, Bekir Sıddık Binboğa Halefoğlu, Ahmet Mesrur Biomed Signal Process Control Article Covid-19 is a disease that affects the upper and lower respiratory tract and has fatal consequences in individuals. Early diagnosis of COVID-19 disease is important. Datasets used in this study were collected from hospitals in Istanbul. The first dataset consists of COVID-19, viral pneumonia, and bacterial pneumonia types. The second dataset consists of the following findings of COVID-19: ground glass opacity, ground glass opacity, and nodule, crazy paving pattern, consolidation, consolidation, and ground glass. The approach suggested in this paper is based on artificial intelligence. The proposed approach consists of three steps. As a first step, preprocessing was applied and, in this step, the Fourier Transform and Gradient-weighted Class Activation Mapping methods were applied to the input images together. In the second step, type-based activation sets were created with three different ResNet models before the Softmax method. In the third step, the best type-based activations were selected among the CNN models using the local interpretable model-agnostic explanations method and re-classified with the Softmax method. An overall accuracy success of 99.15% was achieved with the proposed approach in the dataset containing three types of image sets. In the dataset consisting of COVID-19 findings, an overall accuracy success of 99.62% was achieved with the recommended approach. Elsevier Ltd. 2022-01 2021-09-02 /pmc/articles/PMC8410514/ /pubmed/34490055 http://dx.doi.org/10.1016/j.bspc.2021.103128 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Toğaçar, Mesut
Muzoğlu, Nedim
Ergen, Burhan
Yarman, Bekir Sıddık Binboğa
Halefoğlu, Ahmet Mesrur
Detection of COVID-19 findings by the local interpretable model-agnostic explanations method of types-based activations extracted from CNNs
title Detection of COVID-19 findings by the local interpretable model-agnostic explanations method of types-based activations extracted from CNNs
title_full Detection of COVID-19 findings by the local interpretable model-agnostic explanations method of types-based activations extracted from CNNs
title_fullStr Detection of COVID-19 findings by the local interpretable model-agnostic explanations method of types-based activations extracted from CNNs
title_full_unstemmed Detection of COVID-19 findings by the local interpretable model-agnostic explanations method of types-based activations extracted from CNNs
title_short Detection of COVID-19 findings by the local interpretable model-agnostic explanations method of types-based activations extracted from CNNs
title_sort detection of covid-19 findings by the local interpretable model-agnostic explanations method of types-based activations extracted from cnns
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8410514/
https://www.ncbi.nlm.nih.gov/pubmed/34490055
http://dx.doi.org/10.1016/j.bspc.2021.103128
work_keys_str_mv AT togacarmesut detectionofcovid19findingsbythelocalinterpretablemodelagnosticexplanationsmethodoftypesbasedactivationsextractedfromcnns
AT muzoglunedim detectionofcovid19findingsbythelocalinterpretablemodelagnosticexplanationsmethodoftypesbasedactivationsextractedfromcnns
AT ergenburhan detectionofcovid19findingsbythelocalinterpretablemodelagnosticexplanationsmethodoftypesbasedactivationsextractedfromcnns
AT yarmanbekirsıddıkbinboga detectionofcovid19findingsbythelocalinterpretablemodelagnosticexplanationsmethodoftypesbasedactivationsextractedfromcnns
AT halefogluahmetmesrur detectionofcovid19findingsbythelocalinterpretablemodelagnosticexplanationsmethodoftypesbasedactivationsextractedfromcnns