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The basis of easy controllability in Boolean networks
Effective control of biological systems can often be achieved through the control of a surprisingly small number of distinct variables. We bring clarity to such results using the formalism of Boolean dynamical networks, analyzing the effectiveness of external control in selecting a desired final sta...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8410781/ https://www.ncbi.nlm.nih.gov/pubmed/34471107 http://dx.doi.org/10.1038/s41467-021-25533-3 |
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author | Borriello, Enrico Daniels, Bryan C. |
author_facet | Borriello, Enrico Daniels, Bryan C. |
author_sort | Borriello, Enrico |
collection | PubMed |
description | Effective control of biological systems can often be achieved through the control of a surprisingly small number of distinct variables. We bring clarity to such results using the formalism of Boolean dynamical networks, analyzing the effectiveness of external control in selecting a desired final state when that state is among the original attractors of the dynamics. Analyzing 49 existing biological network models, we find strong numerical evidence that the average number of nodes that must be forced scales logarithmically with the number of original attractors. This suggests that biological networks may be typically easy to control even when the number of interacting components is large. We provide a theoretical explanation of the scaling by separating controlling nodes into three types: those that act as inputs, those that distinguish among attractors, and any remaining nodes. We further identify characteristics of dynamics that can invalidate this scaling, and speculate about how this relates more broadly to non-biological systems. |
format | Online Article Text |
id | pubmed-8410781 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-84107812021-09-22 The basis of easy controllability in Boolean networks Borriello, Enrico Daniels, Bryan C. Nat Commun Article Effective control of biological systems can often be achieved through the control of a surprisingly small number of distinct variables. We bring clarity to such results using the formalism of Boolean dynamical networks, analyzing the effectiveness of external control in selecting a desired final state when that state is among the original attractors of the dynamics. Analyzing 49 existing biological network models, we find strong numerical evidence that the average number of nodes that must be forced scales logarithmically with the number of original attractors. This suggests that biological networks may be typically easy to control even when the number of interacting components is large. We provide a theoretical explanation of the scaling by separating controlling nodes into three types: those that act as inputs, those that distinguish among attractors, and any remaining nodes. We further identify characteristics of dynamics that can invalidate this scaling, and speculate about how this relates more broadly to non-biological systems. Nature Publishing Group UK 2021-09-01 /pmc/articles/PMC8410781/ /pubmed/34471107 http://dx.doi.org/10.1038/s41467-021-25533-3 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Borriello, Enrico Daniels, Bryan C. The basis of easy controllability in Boolean networks |
title | The basis of easy controllability in Boolean networks |
title_full | The basis of easy controllability in Boolean networks |
title_fullStr | The basis of easy controllability in Boolean networks |
title_full_unstemmed | The basis of easy controllability in Boolean networks |
title_short | The basis of easy controllability in Boolean networks |
title_sort | basis of easy controllability in boolean networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8410781/ https://www.ncbi.nlm.nih.gov/pubmed/34471107 http://dx.doi.org/10.1038/s41467-021-25533-3 |
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