Cargando…

Deep learning for distinguishing normal versus abnormal chest radiographs and generalization to two unseen diseases tuberculosis and COVID-19

Chest radiography (CXR) is the most widely-used thoracic clinical imaging modality and is crucial for guiding the management of cardiothoracic conditions. The detection of specific CXR findings has been the main focus of several artificial intelligence (AI) systems. However, the wide range of possib...

Descripción completa

Detalles Bibliográficos
Autores principales: Nabulsi, Zaid, Sellergren, Andrew, Jamshy, Shahar, Lau, Charles, Santos, Edward, Kiraly, Atilla P., Ye, Wenxing, Yang, Jie, Pilgrim, Rory, Kazemzadeh, Sahar, Yu, Jin, Kalidindi, Sreenivasa Raju, Etemadi, Mozziyar, Garcia-Vicente, Florencia, Melnick, David, Corrado, Greg S., Peng, Lily, Eswaran, Krish, Tse, Daniel, Beladia, Neeral, Liu, Yun, Chen, Po-Hsuan Cameron, Shetty, Shravya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8410908/
https://www.ncbi.nlm.nih.gov/pubmed/34471144
http://dx.doi.org/10.1038/s41598-021-93967-2
_version_ 1783747194908573696
author Nabulsi, Zaid
Sellergren, Andrew
Jamshy, Shahar
Lau, Charles
Santos, Edward
Kiraly, Atilla P.
Ye, Wenxing
Yang, Jie
Pilgrim, Rory
Kazemzadeh, Sahar
Yu, Jin
Kalidindi, Sreenivasa Raju
Etemadi, Mozziyar
Garcia-Vicente, Florencia
Melnick, David
Corrado, Greg S.
Peng, Lily
Eswaran, Krish
Tse, Daniel
Beladia, Neeral
Liu, Yun
Chen, Po-Hsuan Cameron
Shetty, Shravya
author_facet Nabulsi, Zaid
Sellergren, Andrew
Jamshy, Shahar
Lau, Charles
Santos, Edward
Kiraly, Atilla P.
Ye, Wenxing
Yang, Jie
Pilgrim, Rory
Kazemzadeh, Sahar
Yu, Jin
Kalidindi, Sreenivasa Raju
Etemadi, Mozziyar
Garcia-Vicente, Florencia
Melnick, David
Corrado, Greg S.
Peng, Lily
Eswaran, Krish
Tse, Daniel
Beladia, Neeral
Liu, Yun
Chen, Po-Hsuan Cameron
Shetty, Shravya
author_sort Nabulsi, Zaid
collection PubMed
description Chest radiography (CXR) is the most widely-used thoracic clinical imaging modality and is crucial for guiding the management of cardiothoracic conditions. The detection of specific CXR findings has been the main focus of several artificial intelligence (AI) systems. However, the wide range of possible CXR abnormalities makes it impractical to detect every possible condition by building multiple separate systems, each of which detects one or more pre-specified conditions. In this work, we developed and evaluated an AI system to classify CXRs as normal or abnormal. For training and tuning the system, we used a de-identified dataset of 248,445 patients from a multi-city hospital network in India. To assess generalizability, we evaluated our system using 6 international datasets from India, China, and the United States. Of these datasets, 4 focused on diseases that the AI was not trained to detect: 2 datasets with tuberculosis and 2 datasets with coronavirus disease 2019. Our results suggest that the AI system trained using a large dataset containing a diverse array of CXR abnormalities generalizes to new patient populations and unseen diseases. In a simulated workflow where the AI system prioritized abnormal cases, the turnaround time for abnormal cases reduced by 7–28%. These results represent an important step towards evaluating whether AI can be safely used to flag cases in a general setting where previously unseen abnormalities exist. Lastly, to facilitate the continued development of AI models for CXR, we release our collected labels for the publicly available dataset.
format Online
Article
Text
id pubmed-8410908
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-84109082021-09-03 Deep learning for distinguishing normal versus abnormal chest radiographs and generalization to two unseen diseases tuberculosis and COVID-19 Nabulsi, Zaid Sellergren, Andrew Jamshy, Shahar Lau, Charles Santos, Edward Kiraly, Atilla P. Ye, Wenxing Yang, Jie Pilgrim, Rory Kazemzadeh, Sahar Yu, Jin Kalidindi, Sreenivasa Raju Etemadi, Mozziyar Garcia-Vicente, Florencia Melnick, David Corrado, Greg S. Peng, Lily Eswaran, Krish Tse, Daniel Beladia, Neeral Liu, Yun Chen, Po-Hsuan Cameron Shetty, Shravya Sci Rep Article Chest radiography (CXR) is the most widely-used thoracic clinical imaging modality and is crucial for guiding the management of cardiothoracic conditions. The detection of specific CXR findings has been the main focus of several artificial intelligence (AI) systems. However, the wide range of possible CXR abnormalities makes it impractical to detect every possible condition by building multiple separate systems, each of which detects one or more pre-specified conditions. In this work, we developed and evaluated an AI system to classify CXRs as normal or abnormal. For training and tuning the system, we used a de-identified dataset of 248,445 patients from a multi-city hospital network in India. To assess generalizability, we evaluated our system using 6 international datasets from India, China, and the United States. Of these datasets, 4 focused on diseases that the AI was not trained to detect: 2 datasets with tuberculosis and 2 datasets with coronavirus disease 2019. Our results suggest that the AI system trained using a large dataset containing a diverse array of CXR abnormalities generalizes to new patient populations and unseen diseases. In a simulated workflow where the AI system prioritized abnormal cases, the turnaround time for abnormal cases reduced by 7–28%. These results represent an important step towards evaluating whether AI can be safely used to flag cases in a general setting where previously unseen abnormalities exist. Lastly, to facilitate the continued development of AI models for CXR, we release our collected labels for the publicly available dataset. Nature Publishing Group UK 2021-09-01 /pmc/articles/PMC8410908/ /pubmed/34471144 http://dx.doi.org/10.1038/s41598-021-93967-2 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Nabulsi, Zaid
Sellergren, Andrew
Jamshy, Shahar
Lau, Charles
Santos, Edward
Kiraly, Atilla P.
Ye, Wenxing
Yang, Jie
Pilgrim, Rory
Kazemzadeh, Sahar
Yu, Jin
Kalidindi, Sreenivasa Raju
Etemadi, Mozziyar
Garcia-Vicente, Florencia
Melnick, David
Corrado, Greg S.
Peng, Lily
Eswaran, Krish
Tse, Daniel
Beladia, Neeral
Liu, Yun
Chen, Po-Hsuan Cameron
Shetty, Shravya
Deep learning for distinguishing normal versus abnormal chest radiographs and generalization to two unseen diseases tuberculosis and COVID-19
title Deep learning for distinguishing normal versus abnormal chest radiographs and generalization to two unseen diseases tuberculosis and COVID-19
title_full Deep learning for distinguishing normal versus abnormal chest radiographs and generalization to two unseen diseases tuberculosis and COVID-19
title_fullStr Deep learning for distinguishing normal versus abnormal chest radiographs and generalization to two unseen diseases tuberculosis and COVID-19
title_full_unstemmed Deep learning for distinguishing normal versus abnormal chest radiographs and generalization to two unseen diseases tuberculosis and COVID-19
title_short Deep learning for distinguishing normal versus abnormal chest radiographs and generalization to two unseen diseases tuberculosis and COVID-19
title_sort deep learning for distinguishing normal versus abnormal chest radiographs and generalization to two unseen diseases tuberculosis and covid-19
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8410908/
https://www.ncbi.nlm.nih.gov/pubmed/34471144
http://dx.doi.org/10.1038/s41598-021-93967-2
work_keys_str_mv AT nabulsizaid deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT sellergrenandrew deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT jamshyshahar deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT laucharles deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT santosedward deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT kiralyatillap deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT yewenxing deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT yangjie deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT pilgrimrory deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT kazemzadehsahar deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT yujin deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT kalidindisreenivasaraju deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT etemadimozziyar deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT garciavicenteflorencia deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT melnickdavid deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT corradogregs deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT penglily deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT eswarankrish deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT tsedaniel deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT beladianeeral deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT liuyun deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT chenpohsuancameron deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19
AT shettyshravya deeplearningfordistinguishingnormalversusabnormalchestradiographsandgeneralizationtotwounseendiseasestuberculosisandcovid19