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The shared genetic architecture between epidemiological and behavioral traits with lung cancer

The complex polygenic nature of lung cancer is not fully characterized. Our study seeks to identify novel phenotypes associated with lung cancer using cross-trait linkage disequilibrium score regression (LDSR). We measured pairwise genetic correlation (r(g)) and SNP heritability (h(2)) between 347 t...

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Autores principales: Pettit, Rowland W., Byun, Jinyoung, Han, Younghun, Ostrom, Quinn T., Edelson, Jacob, Walsh, Kyle M., Bondy, Melissa L., Hung, Rayjean J., McKay, James D., Amos, Christopher I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8413319/
https://www.ncbi.nlm.nih.gov/pubmed/34475455
http://dx.doi.org/10.1038/s41598-021-96685-x
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author Pettit, Rowland W.
Byun, Jinyoung
Han, Younghun
Ostrom, Quinn T.
Edelson, Jacob
Walsh, Kyle M.
Bondy, Melissa L.
Hung, Rayjean J.
McKay, James D.
Amos, Christopher I.
author_facet Pettit, Rowland W.
Byun, Jinyoung
Han, Younghun
Ostrom, Quinn T.
Edelson, Jacob
Walsh, Kyle M.
Bondy, Melissa L.
Hung, Rayjean J.
McKay, James D.
Amos, Christopher I.
author_sort Pettit, Rowland W.
collection PubMed
description The complex polygenic nature of lung cancer is not fully characterized. Our study seeks to identify novel phenotypes associated with lung cancer using cross-trait linkage disequilibrium score regression (LDSR). We measured pairwise genetic correlation (r(g)) and SNP heritability (h(2)) between 347 traits and lung cancer risk using genome-wide association study summary statistics from the UKBB and OncoArray consortium. Further, we conducted analysis after removing genomic regions previously associated with smoking behaviors to mitigate potential confounding effects. We found significant negative genetic correlations between lung cancer risk and dietary behaviors, fitness metrics, educational attainment, and other psychosocial traits. Alcohol taken with meals (r(g) = − 0.41, h(2) = 0.10, p = 1.33 × 10(–16)), increased fluid intelligence scores (r(g) = − 0.25, h(2) = 0.22, p = 4.54 × 10(–8)), and the age at which full time education was completed (r(g) = − 0.45, h(2) = 0.11, p = 1.24 × 10(–20)) demonstrated negative genetic correlation with lung cancer susceptibility. The body mass index was positively correlated with lung cancer risk (r(g) = 0.20, h(2) = 0.25, p = 2.61 × 10(–9)). This analysis reveals shared genetic architecture between several traits and lung cancer predisposition. Future work should test for causal relationships and investigate common underlying genetic mechanisms across these genetically correlated traits.
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spelling pubmed-84133192021-09-07 The shared genetic architecture between epidemiological and behavioral traits with lung cancer Pettit, Rowland W. Byun, Jinyoung Han, Younghun Ostrom, Quinn T. Edelson, Jacob Walsh, Kyle M. Bondy, Melissa L. Hung, Rayjean J. McKay, James D. Amos, Christopher I. Sci Rep Article The complex polygenic nature of lung cancer is not fully characterized. Our study seeks to identify novel phenotypes associated with lung cancer using cross-trait linkage disequilibrium score regression (LDSR). We measured pairwise genetic correlation (r(g)) and SNP heritability (h(2)) between 347 traits and lung cancer risk using genome-wide association study summary statistics from the UKBB and OncoArray consortium. Further, we conducted analysis after removing genomic regions previously associated with smoking behaviors to mitigate potential confounding effects. We found significant negative genetic correlations between lung cancer risk and dietary behaviors, fitness metrics, educational attainment, and other psychosocial traits. Alcohol taken with meals (r(g) = − 0.41, h(2) = 0.10, p = 1.33 × 10(–16)), increased fluid intelligence scores (r(g) = − 0.25, h(2) = 0.22, p = 4.54 × 10(–8)), and the age at which full time education was completed (r(g) = − 0.45, h(2) = 0.11, p = 1.24 × 10(–20)) demonstrated negative genetic correlation with lung cancer susceptibility. The body mass index was positively correlated with lung cancer risk (r(g) = 0.20, h(2) = 0.25, p = 2.61 × 10(–9)). This analysis reveals shared genetic architecture between several traits and lung cancer predisposition. Future work should test for causal relationships and investigate common underlying genetic mechanisms across these genetically correlated traits. Nature Publishing Group UK 2021-09-02 /pmc/articles/PMC8413319/ /pubmed/34475455 http://dx.doi.org/10.1038/s41598-021-96685-x Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Pettit, Rowland W.
Byun, Jinyoung
Han, Younghun
Ostrom, Quinn T.
Edelson, Jacob
Walsh, Kyle M.
Bondy, Melissa L.
Hung, Rayjean J.
McKay, James D.
Amos, Christopher I.
The shared genetic architecture between epidemiological and behavioral traits with lung cancer
title The shared genetic architecture between epidemiological and behavioral traits with lung cancer
title_full The shared genetic architecture between epidemiological and behavioral traits with lung cancer
title_fullStr The shared genetic architecture between epidemiological and behavioral traits with lung cancer
title_full_unstemmed The shared genetic architecture between epidemiological and behavioral traits with lung cancer
title_short The shared genetic architecture between epidemiological and behavioral traits with lung cancer
title_sort shared genetic architecture between epidemiological and behavioral traits with lung cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8413319/
https://www.ncbi.nlm.nih.gov/pubmed/34475455
http://dx.doi.org/10.1038/s41598-021-96685-x
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