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Electrode pooling can boost the yield of extracellular recordings with switchable silicon probes

State-of-the-art silicon probes for electrical recording from neurons have thousands of recording sites. However, due to volume limitations there are typically many fewer wires carrying signals off the probe, which restricts the number of channels that can be recorded simultaneously. To overcome thi...

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Autores principales: Lee, Kyu Hyun, Ni, Yu-Li, Colonell, Jennifer, Karsh, Bill, Putzeys, Jan, Pachitariu, Marius, Harris, Timothy D., Meister, Markus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8413349/
https://www.ncbi.nlm.nih.gov/pubmed/34475396
http://dx.doi.org/10.1038/s41467-021-25443-4
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author Lee, Kyu Hyun
Ni, Yu-Li
Colonell, Jennifer
Karsh, Bill
Putzeys, Jan
Pachitariu, Marius
Harris, Timothy D.
Meister, Markus
author_facet Lee, Kyu Hyun
Ni, Yu-Li
Colonell, Jennifer
Karsh, Bill
Putzeys, Jan
Pachitariu, Marius
Harris, Timothy D.
Meister, Markus
author_sort Lee, Kyu Hyun
collection PubMed
description State-of-the-art silicon probes for electrical recording from neurons have thousands of recording sites. However, due to volume limitations there are typically many fewer wires carrying signals off the probe, which restricts the number of channels that can be recorded simultaneously. To overcome this fundamental constraint, we propose a method called electrode pooling that uses a single wire to serve many recording sites through a set of controllable switches. Here we present the framework behind this method and an experimental strategy to support it. We then demonstrate its feasibility by implementing electrode pooling on the Neuropixels 1.0 electrode array and characterizing its effect on signal and noise. Finally we use simulations to explore the conditions under which electrode pooling saves wires without compromising the content of the recordings. We make recommendations on the design of future devices to take advantage of this strategy.
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spelling pubmed-84133492021-09-22 Electrode pooling can boost the yield of extracellular recordings with switchable silicon probes Lee, Kyu Hyun Ni, Yu-Li Colonell, Jennifer Karsh, Bill Putzeys, Jan Pachitariu, Marius Harris, Timothy D. Meister, Markus Nat Commun Article State-of-the-art silicon probes for electrical recording from neurons have thousands of recording sites. However, due to volume limitations there are typically many fewer wires carrying signals off the probe, which restricts the number of channels that can be recorded simultaneously. To overcome this fundamental constraint, we propose a method called electrode pooling that uses a single wire to serve many recording sites through a set of controllable switches. Here we present the framework behind this method and an experimental strategy to support it. We then demonstrate its feasibility by implementing electrode pooling on the Neuropixels 1.0 electrode array and characterizing its effect on signal and noise. Finally we use simulations to explore the conditions under which electrode pooling saves wires without compromising the content of the recordings. We make recommendations on the design of future devices to take advantage of this strategy. Nature Publishing Group UK 2021-09-02 /pmc/articles/PMC8413349/ /pubmed/34475396 http://dx.doi.org/10.1038/s41467-021-25443-4 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Lee, Kyu Hyun
Ni, Yu-Li
Colonell, Jennifer
Karsh, Bill
Putzeys, Jan
Pachitariu, Marius
Harris, Timothy D.
Meister, Markus
Electrode pooling can boost the yield of extracellular recordings with switchable silicon probes
title Electrode pooling can boost the yield of extracellular recordings with switchable silicon probes
title_full Electrode pooling can boost the yield of extracellular recordings with switchable silicon probes
title_fullStr Electrode pooling can boost the yield of extracellular recordings with switchable silicon probes
title_full_unstemmed Electrode pooling can boost the yield of extracellular recordings with switchable silicon probes
title_short Electrode pooling can boost the yield of extracellular recordings with switchable silicon probes
title_sort electrode pooling can boost the yield of extracellular recordings with switchable silicon probes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8413349/
https://www.ncbi.nlm.nih.gov/pubmed/34475396
http://dx.doi.org/10.1038/s41467-021-25443-4
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