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Automatic classification of autism spectrum disorder in children using cortical thickness and support vector machine
OBJECTIVE: Autism spectrum disorder (ASD) is a neurodevelopmental condition with a heterogeneous phenotype. The role of biomarkers in ASD diagnosis has been highlighted; cortical thickness has proved to be involved in the etiopathogenesis of ASD core symptoms. We apply support vector machine, a supe...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8413814/ https://www.ncbi.nlm.nih.gov/pubmed/34264004 http://dx.doi.org/10.1002/brb3.2238 |
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author | Squarcina, Letizia Nosari, Guido Marin, Riccardo Castellani, Umberto Bellani, Marcella Bonivento, Carolina Fabbro, Franco Molteni, Massimo Brambilla, Paolo |
author_facet | Squarcina, Letizia Nosari, Guido Marin, Riccardo Castellani, Umberto Bellani, Marcella Bonivento, Carolina Fabbro, Franco Molteni, Massimo Brambilla, Paolo |
author_sort | Squarcina, Letizia |
collection | PubMed |
description | OBJECTIVE: Autism spectrum disorder (ASD) is a neurodevelopmental condition with a heterogeneous phenotype. The role of biomarkers in ASD diagnosis has been highlighted; cortical thickness has proved to be involved in the etiopathogenesis of ASD core symptoms. We apply support vector machine, a supervised machine learning method, in order to identify specific cortical thickness alterations in ASD subjects. METHODS: A sample of 76 subjects (9.5 ± 3.4 years old) has been selected, 40 diagnosed with ASD and 36 typically developed subjects. All children underwent a magnetic resonance imaging (MRI) examination; T1‐MPRAGE sequences were analyzed to extract features for the characterization and parcellation of regions of interests (ROI); average cortical thickness (CT) has been measured for each ROI. For the classification process, the extracted features were used as input for a classifier to identify ASD subjects through a “learning by example” procedure; the features with best performance was then selected by “greedy forward‐feature selection.” Finally, this model underwent a leave‐one‐out cross‐validation approach. RESULTS: From the training set of 68 ROIs, five ROIs reached accuracies of over 70%. After this phase, we used a recursive feature selection process in order to identify the eight features with the best accuracy (84.2%). CT resulted higher in ASD compared to controls in all the ROIs identified at the end of the process. CONCLUSION: We found increased CT in various brain regions in ASD subjects, confirming their role in the pathogenesis of this condition. Considering the brain development curve during ages, these changes in CT may normalize during development. Further validation on a larger sample is required. |
format | Online Article Text |
id | pubmed-8413814 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84138142021-09-07 Automatic classification of autism spectrum disorder in children using cortical thickness and support vector machine Squarcina, Letizia Nosari, Guido Marin, Riccardo Castellani, Umberto Bellani, Marcella Bonivento, Carolina Fabbro, Franco Molteni, Massimo Brambilla, Paolo Brain Behav Original Research OBJECTIVE: Autism spectrum disorder (ASD) is a neurodevelopmental condition with a heterogeneous phenotype. The role of biomarkers in ASD diagnosis has been highlighted; cortical thickness has proved to be involved in the etiopathogenesis of ASD core symptoms. We apply support vector machine, a supervised machine learning method, in order to identify specific cortical thickness alterations in ASD subjects. METHODS: A sample of 76 subjects (9.5 ± 3.4 years old) has been selected, 40 diagnosed with ASD and 36 typically developed subjects. All children underwent a magnetic resonance imaging (MRI) examination; T1‐MPRAGE sequences were analyzed to extract features for the characterization and parcellation of regions of interests (ROI); average cortical thickness (CT) has been measured for each ROI. For the classification process, the extracted features were used as input for a classifier to identify ASD subjects through a “learning by example” procedure; the features with best performance was then selected by “greedy forward‐feature selection.” Finally, this model underwent a leave‐one‐out cross‐validation approach. RESULTS: From the training set of 68 ROIs, five ROIs reached accuracies of over 70%. After this phase, we used a recursive feature selection process in order to identify the eight features with the best accuracy (84.2%). CT resulted higher in ASD compared to controls in all the ROIs identified at the end of the process. CONCLUSION: We found increased CT in various brain regions in ASD subjects, confirming their role in the pathogenesis of this condition. Considering the brain development curve during ages, these changes in CT may normalize during development. Further validation on a larger sample is required. John Wiley and Sons Inc. 2021-07-15 /pmc/articles/PMC8413814/ /pubmed/34264004 http://dx.doi.org/10.1002/brb3.2238 Text en © 2021 The Authors. Brain and Behavior published by Wiley Periodicals LLC https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Squarcina, Letizia Nosari, Guido Marin, Riccardo Castellani, Umberto Bellani, Marcella Bonivento, Carolina Fabbro, Franco Molteni, Massimo Brambilla, Paolo Automatic classification of autism spectrum disorder in children using cortical thickness and support vector machine |
title | Automatic classification of autism spectrum disorder in children using cortical thickness and support vector machine |
title_full | Automatic classification of autism spectrum disorder in children using cortical thickness and support vector machine |
title_fullStr | Automatic classification of autism spectrum disorder in children using cortical thickness and support vector machine |
title_full_unstemmed | Automatic classification of autism spectrum disorder in children using cortical thickness and support vector machine |
title_short | Automatic classification of autism spectrum disorder in children using cortical thickness and support vector machine |
title_sort | automatic classification of autism spectrum disorder in children using cortical thickness and support vector machine |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8413814/ https://www.ncbi.nlm.nih.gov/pubmed/34264004 http://dx.doi.org/10.1002/brb3.2238 |
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