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MeiosisOnline: A Manually Curated Database for Tracking and Predicting Genes Associated With Meiosis

Meiosis, an essential step in gametogenesis, is the key event in sexually reproducing organisms. Thousands of genes have been reported to be involved in meiosis. Therefore, a specialist database is much needed for scientists to know about the function of these genes quickly and to search for genes w...

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Autores principales: Jiang, Xiaohua, Zhao, Daren, Ali, Asim, Xu, Bo, Liu, Wei, Wen, Jie, Zhang, Huan, Shi, Qinghua, Zhang, Yuanwei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8415030/
https://www.ncbi.nlm.nih.gov/pubmed/34485275
http://dx.doi.org/10.3389/fcell.2021.673073
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author Jiang, Xiaohua
Zhao, Daren
Ali, Asim
Xu, Bo
Liu, Wei
Wen, Jie
Zhang, Huan
Shi, Qinghua
Zhang, Yuanwei
author_facet Jiang, Xiaohua
Zhao, Daren
Ali, Asim
Xu, Bo
Liu, Wei
Wen, Jie
Zhang, Huan
Shi, Qinghua
Zhang, Yuanwei
author_sort Jiang, Xiaohua
collection PubMed
description Meiosis, an essential step in gametogenesis, is the key event in sexually reproducing organisms. Thousands of genes have been reported to be involved in meiosis. Therefore, a specialist database is much needed for scientists to know about the function of these genes quickly and to search for genes with potential roles in meiosis. Here, we developed “MeiosisOnline,” a publicly accessible, comprehensive database of known functional genes and potential candidates in meiosis (https://mcg.ustc.edu.cn/bsc/meiosis/index.html). A total of 2,052 meiotic genes were manually curated from literature resource and were classified into different categories. Annotation information was provided for both meiotic genes and predicted candidates, including basic information, function, protein–protein interaction (PPI), and expression data. On the other hand, 165 mouse genes were predicted as potential candidates in meiosis using the “Greed AUC Stepwise” algorithm. Thus, MeiosisOnline provides the most updated and detailed information of experimental verified and predicted genes in meiosis. Furthermore, the searching tools and friendly interface of MeiosisOnline will greatly help researchers in studying meiosis in an easy and efficient way.
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spelling pubmed-84150302021-09-04 MeiosisOnline: A Manually Curated Database for Tracking and Predicting Genes Associated With Meiosis Jiang, Xiaohua Zhao, Daren Ali, Asim Xu, Bo Liu, Wei Wen, Jie Zhang, Huan Shi, Qinghua Zhang, Yuanwei Front Cell Dev Biol Cell and Developmental Biology Meiosis, an essential step in gametogenesis, is the key event in sexually reproducing organisms. Thousands of genes have been reported to be involved in meiosis. Therefore, a specialist database is much needed for scientists to know about the function of these genes quickly and to search for genes with potential roles in meiosis. Here, we developed “MeiosisOnline,” a publicly accessible, comprehensive database of known functional genes and potential candidates in meiosis (https://mcg.ustc.edu.cn/bsc/meiosis/index.html). A total of 2,052 meiotic genes were manually curated from literature resource and were classified into different categories. Annotation information was provided for both meiotic genes and predicted candidates, including basic information, function, protein–protein interaction (PPI), and expression data. On the other hand, 165 mouse genes were predicted as potential candidates in meiosis using the “Greed AUC Stepwise” algorithm. Thus, MeiosisOnline provides the most updated and detailed information of experimental verified and predicted genes in meiosis. Furthermore, the searching tools and friendly interface of MeiosisOnline will greatly help researchers in studying meiosis in an easy and efficient way. Frontiers Media S.A. 2021-08-13 /pmc/articles/PMC8415030/ /pubmed/34485275 http://dx.doi.org/10.3389/fcell.2021.673073 Text en Copyright © 2021 Jiang, Zhao, Ali, Xu, Liu, Wen, Zhang, Shi and Zhang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Jiang, Xiaohua
Zhao, Daren
Ali, Asim
Xu, Bo
Liu, Wei
Wen, Jie
Zhang, Huan
Shi, Qinghua
Zhang, Yuanwei
MeiosisOnline: A Manually Curated Database for Tracking and Predicting Genes Associated With Meiosis
title MeiosisOnline: A Manually Curated Database for Tracking and Predicting Genes Associated With Meiosis
title_full MeiosisOnline: A Manually Curated Database for Tracking and Predicting Genes Associated With Meiosis
title_fullStr MeiosisOnline: A Manually Curated Database for Tracking and Predicting Genes Associated With Meiosis
title_full_unstemmed MeiosisOnline: A Manually Curated Database for Tracking and Predicting Genes Associated With Meiosis
title_short MeiosisOnline: A Manually Curated Database for Tracking and Predicting Genes Associated With Meiosis
title_sort meiosisonline: a manually curated database for tracking and predicting genes associated with meiosis
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8415030/
https://www.ncbi.nlm.nih.gov/pubmed/34485275
http://dx.doi.org/10.3389/fcell.2021.673073
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